Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G24
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...   103   2e-22
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   1.3  
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048...    29   7.1  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   9.3  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score =  103 bits (247), Expect = 2e-22
 Identities = 54/164 (32%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
 Frame = +2

Query: 284 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 457
           ++ LD +   S +V DT  F+  +++ PT AT + SL+L  AG+   +++  +D A+  G
Sbjct: 63  VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122

Query: 458 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 634
           + N     E++++  L       G E+  ++PGRVS E+DARL++D    I +  + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182

Query: 635 FAEHGIKKERILIKLASTWEGIQAAKXLEKKHGIHCNLTLLVLF 766
           +++H +  ER+L K+ +TW+GI+A++ LE + GI  +LT +  F
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSF 225


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 636  NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 523
            N +++++AF  +A  S+ N+ STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>04_04_1498 +
           34002677-34003104,34004427-34004532,34004643-34004811,
           34004901-34005088,34005644-34005763
          Length = 336

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
 Frame = +2

Query: 230 CNISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATT-------NP 388
           CN  L  + G   T   KM+ L  L +H T +         K++KP++  T        P
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLINQP 260

Query: 389 SLILSAA-----GMEQYQHILDKAIKYGKD--NGSSIEEQVAETL---DMLSVLFGCE 532
           S+++S A     GME      D A++Y  D    + +E+ +  ++     L  LFGCE
Sbjct: 261 SVVISDALAKFIGMEGTVP-QDDALRYLWDYIKANQLEDAITGSILCDSKLQELFGCE 317


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 254  SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 433
            S EP  ++T + A DQ K   T+V   G   A    K     T  +L  +   M    ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200

Query: 434  LDKAIKYGKDNGSSIEEQVAETLDMLS 514
             D     G+++GS  E    ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,193,978
Number of Sequences: 37544
Number of extensions: 415830
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)