Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G24
(939 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 1.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 1.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 1.7
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 3.0
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 5.3
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 5.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 7.0
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 7.0
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 9.2
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 22 9.2
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 22 9.2
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 815 LLVVYWIGMLTYQEXLXGQGNP 880
L + YW+ +TYQE Q +P
Sbjct: 483 LNICYWVIYVTYQEEFKWQDSP 504
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 24.2 bits (50), Expect = 1.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 744 ILHCWSSLYQAIACAEAMF 800
+L CW+++Y I A A+F
Sbjct: 106 VLSCWTNIYYIIILAWALF 124
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.2 bits (50), Expect = 1.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 744 ILHCWSSLYQAIACAEAMF 800
+L CW+++Y I A A+F
Sbjct: 159 VLSCWTNIYYIIILAWALF 177
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 23.4 bits (48), Expect = 3.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 524 QKAHSAYPKFQPLVLQWSFHYPFHI 450
++ Y +FQ L L+ FHY ++
Sbjct: 9 RRGRQTYTRFQTLELEKEFHYNHYL 33
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 5.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 411 VWNSISTFLIKLLNMERIMEAPLKNKWL 494
+W+ ST++ K+ N + + L+N WL
Sbjct: 318 IWDYDSTYIPKVKNKKAGSKHLLQNTWL 345
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 22.6 bits (46), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 698 IQAAKXLEKKHGIHCNLTLLVLFVPS 775
IQA E G C+++LL F+PS
Sbjct: 398 IQAGLVDELVRGTKCDVSLLGRFIPS 423
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 487 LFFNGASIILSIFNSFIKNVLILFHTS 407
LF N AS+ + IFN I +L++ H S
Sbjct: 268 LFLNMASVFMRIFN-LICMMLLIGHWS 293
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 543 IFNISHPKSTLSISKVSATCSSMELPLS 460
++ ISHPK L + K E P+S
Sbjct: 327 VYAISHPKYRLELQKRLPWLELQEKPIS 354
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 547 NNF*YFTPKKHTQHIQSFSHLFFNGASIILSI-FNSFI 437
+NF TP++ Q I S + F A II +I + SFI
Sbjct: 430 HNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFI 467
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.8 bits (44), Expect = 9.2
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = +3
Query: 747 LHCWSSLYQ 773
LHCW+++Y+
Sbjct: 257 LHCWATIYK 265
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.8 bits (44), Expect = 9.2
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = +3
Query: 747 LHCWSSLYQ 773
LHCW+++Y+
Sbjct: 257 LHCWATIYK 265
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,949
Number of Sequences: 438
Number of extensions: 4730
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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