Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G23
(928 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.70
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/73 (27%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Frame = +2
Query: 701 PPXPXPXXP--PPXXXXXXXXXXXXXXPPXPXPPXXXXXXPXXXXPXAPXPXPXXXXXXX 874
PP P P P PP P PP P P AP P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 875 XPPPXXPXXXPPP 913
PP P P P
Sbjct: 448 PLPPSAPIAPPLP 460
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/41 (29%), Positives = 12/41 (29%)
Frame = +1
Query: 697 PPPXPXPXXXPPXXXXXPPXXXXXPXXPXXXXXPXXXXPPP 819
PPP P P PP P P P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 777 PPXXXXPXXPXPXPXPXXXXPPXXPXXXXXXXXXPPPXXXXXXPPP 914
PP P P P P PP P PPP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = +2
Query: 779 PXPXPPXXXXXXPXXXXPXAPXPXPXXXXXXXXPPPXXPXXXPPP 913
P P PP P P P P PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/39 (30%), Positives = 12/39 (30%)
Frame = +2
Query: 779 PXPXPPXXXXXXPXXXXPXAPXPXPXXXXXXXXPPPXXP 895
P P P P P P P P PPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 698 PPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXP 793
PPP P PPP PP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 779 PXPXPPXXXXXXPXXXXPXAPXPXPXXXXXXXXPPPXXPXXXPPP 913
P P P P P P P PPP P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP---PPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/74 (27%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Frame = +2
Query: 698 PPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXPPXXXXXXPXXXXPXAPXP--XPXXXXXX 871
P P P PPP PP PP P P AP P
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSE-PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS 1019
Query: 872 XXPPPXXPXXXPPP 913
PP P PP
Sbjct: 1020 KAPPVPLPSADAPP 1033
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Frame = +2
Query: 689 PXXPPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXPP-XXXXXXPXXXXPXAPXP---XPX 856
P P P P P P PP P P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 857 XXXXXXXPPPXXPXXXPP 910
PP P PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPP 1160
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/74 (24%), Positives = 18/74 (24%)
Frame = +2
Query: 689 PXXPPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXPPXXXXXXPXXXXPXAPXPXPXXXXX 868
P P P P P P PP P P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP-PPSEAPPVPKPSVGVP 1208
Query: 869 XXXPPPXXPXXXPP 910
PP P P
Sbjct: 1209 PVPPPSTAPPVPTP 1222
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/73 (24%), Positives = 18/73 (24%), Gaps = 3/73 (4%)
Frame = +2
Query: 701 PPXPXPXXPPPXXXXXXXXXXXXXX---PPXPXPPXXXXXXPXXXXPXAPXPXPXXXXXX 871
PP P P PP PP P P P P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 872 XXPPPXXPXXXPP 910
PP P P
Sbjct: 1191 VPPPSEAPPVPKP 1203
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Frame = +2
Query: 689 PXXPPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXPPXXXXXXP-XXXXPXAPXP---XPX 856
P PP P P PP PP P P P P P P P
Sbjct: 1037 PSTAPPVPIPTSTPP--VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 857 XXXXXXXPPPXXPXXXPPP 913
PP P PP
Sbjct: 1095 PKPSVAAPPVPKPSVAVPP 1113
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/74 (27%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Frame = +3
Query: 699 PPPXXPXXXPP-PXPXXXXXXXXXXXXPPXXXXPXXPXPX-PXPXXXXPPXXPXXXXXXX 872
PP P PP P P P P P P P PP P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVP 1189
Query: 873 XXPPPXXXXXXPPP 914
PPP P P
Sbjct: 1190 PVPPPSEAPPVPKP 1203
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/55 (27%), Positives = 16/55 (29%)
Frame = +2
Query: 689 PXXPPPXPXPXXPPPXXXXXXXXXXXXXXPPXPXPPXXXXXXPXXXXPXAPXPXP 853
P PPP P P P PP P P P P + P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP---SSEAPSVSTPRSSVPSP 1259
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/49 (26%), Positives = 13/49 (26%)
Frame = +3
Query: 705 PXXPXXXPPPXPXXXXXXXXXXXXPPXXXXPXXPXPXPXPXXXXPPXXP 851
P P PP P PP P P P PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,287
Number of Sequences: 5004
Number of extensions: 19729
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -