Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G21
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 310 RRKHQNLKQKRQYLWIMKKTLLRYPKVP*NAP*N 411
           R+   N    R+YL ++K    RY   P NAP N
Sbjct: 437 RKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLN 470


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 304 QKRRKHQNLKQKRQYLWIM 360
           +K+R+ +NL Q +  +W +
Sbjct: 7   KKKRRKKNLNQNQMMIWAL 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,546
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)