Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G19
         (1017 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
 Frame = -3

Query: 745 PGGXXQPXXXGXXGXXXQXRGXXQXGPXXDXG--GGXGXGXXXXGGGRGXXWGG 590
           PGG       G  G      G    GP    G  GG G G    GGG G   GG
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 579  VXAXPPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXP 686
            V   P +     PP    P P PPP S   P    P
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +3

Query: 585  AXPPQXX---PRPPPXXXIPXPXPPPXSXXGPXCXXP 686
            A PPQ     P PPP    P P  PP     P    P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,268
Number of Sequences: 5004
Number of extensions: 18687
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)