Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G19
(1017 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 38 0.009
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 34 0.14
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 33 0.25
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.57
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 31 0.99
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.99
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.99
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.99
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.3
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.7
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 31 1.7
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 30 2.3
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 30 2.3
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.3
Z75549-6|CAC42343.1| 74|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 3.0
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 30 3.0
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 30 3.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.3
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.0
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 9.3
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 38.3 bits (85), Expect = 0.009
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +3
Query: 591 PPQXXPRPPP-XXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPP 743
PP P PPP P P PPP C P C P P C PP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXP 686
PPQ P PPP P P PPP P P
Sbjct: 52 PPQFCP-PPPMCPPPPPPPPPPMCPPPPPPMP 82
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -3
Query: 745 PGGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGGXAXTA 575
PGG QP G G P GGG G GGG G GG A
Sbjct: 289 PGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGGRA 345
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 33.5 bits (73), Expect = 0.25
Identities = 23/76 (30%), Positives = 24/76 (31%)
Frame = -3
Query: 817 PXWXDXRXXXLWGXGVDKXXXXRXPGGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXG 638
P W WG G GG G G + G G GGG G
Sbjct: 53 PGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112
Query: 637 XGXXXXGGGRGXXWGG 590
G GGGRG GG
Sbjct: 113 -GGGGGGGGRGGGGGG 127
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.57
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXG----GGXGXGXXXXGGGRGXXWGGXA 584
GG G G RG GP G GG G G GGGRG GG A
Sbjct: 123 GGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGGA 179
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 31.5 bits (68), Expect = 0.99
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG + G G G Q G GGG G G GGGRG GG
Sbjct: 157 GGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQG-GNQGGGGGRGGNQGG 206
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 652 GGGXGXGXXXXGGGRGXXWGG 590
GGG G G GGGRG GG
Sbjct: 53 GGGRGGGRGGSGGGRGGGSGG 73
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -3
Query: 739 GXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWG 593
G Q G RG Q GP GGG G G G GRG WG
Sbjct: 223 GGSQGGWGNQGGQQGGGRGGQQ-GPGGWGGGGRGGG--WGGWGRGSRWG 268
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.99
Identities = 32/140 (22%), Positives = 32/140 (22%), Gaps = 4/140 (2%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPPGXLXXXXLS 770
PP PPP P P PPP P P P G PP
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPE 341
Query: 771 TPXPHKXXXLXSXQXG----XXXXXXXXXXXXVXXXPRNGXXAPPRGAARSSXXRXXSDX 938
P S G PR G PRG R S
Sbjct: 342 RSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESR 401
Query: 939 XGSXSPXCPPPLKXXXPWSP 998
P PP SP
Sbjct: 402 EEPRGPRRSPPTGSPPTGSP 421
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.99
Identities = 32/140 (22%), Positives = 32/140 (22%), Gaps = 4/140 (2%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPPGXLXXXXLS 770
PP PPP P P PPP P P P G PP
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPE 362
Query: 771 TPXPHKXXXLXSXQXG----XXXXXXXXXXXXVXXXPRNGXXAPPRGAARSSXXRXXSDX 938
P S G PR G PRG R S
Sbjct: 363 RSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESR 422
Query: 939 XGSXSPXCPPPLKXXXPWSP 998
P PP SP
Sbjct: 423 EEPRGPRRSPPTGSPPTGSP 442
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.99
Identities = 32/140 (22%), Positives = 32/140 (22%), Gaps = 4/140 (2%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPPGXLXXXXLS 770
PP PPP P P PPP P P P G PP
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPE 347
Query: 771 TPXPHKXXXLXSXQXG----XXXXXXXXXXXXVXXXPRNGXXAPPRGAARSSXXRXXSDX 938
P S G PR G PRG R S
Sbjct: 348 RSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESR 407
Query: 939 XGSXSPXCPPPLKXXXPWSP 998
P PP SP
Sbjct: 408 EEPRGPRRSPPTGSPPTGSP 427
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G Q G D GGG G GGG WGG
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ----QGGGGQGGWGG 273
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G Q G D GGG G GGG WGG
Sbjct: 189 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ----QGGGGQGGWGG 235
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G Q G D GGG G GGG WGG
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQ----QGGGGQGGWGG 273
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 576 AVXAXPPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFP 716
A PPQ P PPP P P P P C P P
Sbjct: 37 ATPPCPPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAP 83
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 594 PQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPP 743
P P PP P P PPP S P P P P G PP
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPP-PPPPPPGRTPGPPGMPGMPPPP 320
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/78 (28%), Positives = 25/78 (32%)
Frame = +2
Query: 566 PXLGGRSXXXPXXPAXPPXXXXSXPXTPSXIXXXSXLXXXPPLXXXPXXPRXXXLRXAPR 745
P GR+ P P PP P PS PP P PR
Sbjct: 301 PPPPGRTPGPPGMPGMPP------PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 354
Query: 746 PPXXGXLVHPXPP*XXPP 799
P G ++P PP PP
Sbjct: 355 YPSAGPGMYPPPPPSRPP 372
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 594 PQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPP 743
P P PP P P PPP S P P P P G PP
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPP-PPPPPPGRTPGPPGMPGMPPPP 330
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/78 (28%), Positives = 25/78 (32%)
Frame = +2
Query: 566 PXLGGRSXXXPXXPAXPPXXXXSXPXTPSXIXXXSXLXXXPPLXXXPXXPRXXXLRXAPR 745
P GR+ P P PP P PS PP P PR
Sbjct: 311 PPPPGRTPGPPGMPGMPP------PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 364
Query: 746 PPXXGXLVHPXPP*XXPP 799
P G ++P PP PP
Sbjct: 365 YPSAGPGMYPPPPPSRPP 382
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 579 VXAXPPQXXPRPPPXXXIPXPXPPPXSXXGPXCXXP 686
V A PP PPP P PPP GP C P
Sbjct: 37 VIAGPPPCFDCPPPAPIFVAPPPPP--CFGPACPPP 70
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 576 AVXAXPPQXXPRPPPXXXIPXPXPPPXSXXG 668
A A P PRPP P P PPP + G
Sbjct: 46 AAYAAPAAGYPRPPIGYGAPPPPPPPPAFGG 76
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 576 AVXAXPPQXXPRPPPXXXIPXPXPPPXSXXG 668
A A P PRPP P P PPP + G
Sbjct: 46 AAYAAPAAGYPRPPIGYGAPPPPPPPPAFGG 76
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 576 AVXAXPPQXXPRPPPXXXIPXPXPPPXSXXG 668
A A P PRPP P P PPP + G
Sbjct: 46 AAYAAPAAGYPRPPIGYGAPPPPPPPPAFGG 76
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGP 671
PP P PP P P PPP GP
Sbjct: 576 PPPPPPPPPMLGGPPPPPPPPGGLMGP 602
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/68 (29%), Positives = 23/68 (33%)
Frame = +2
Query: 596 PXXPAXPPXXXXSXPXTPSXIXXXSXLXXXPPLXXXPXXPRXXXLRXAPRPPXXGXLVHP 775
P PA PP S P P + P+ P P L AP PP +
Sbjct: 530 PPRPAPPP--VSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLG 587
Query: 776 XPP*XXPP 799
PP PP
Sbjct: 588 GPPPPPPP 595
>Z75549-6|CAC42343.1| 74|Caenorhabditis elegans Hypothetical
protein T19C4.7 protein.
Length = 74
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 670 GPXXDXGGGXGXGXXXXGGG-RGXXWGG 590
GP GGG G G GGG R WGG
Sbjct: 27 GPYGGYGGGYGGGPWGYGGGWRRRHWGG 54
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 307 GXGXXRPXXXF-PXPXXXXAGGXGFXXPPXRPPPXXAXGEAF 185
G G RP P P G G+ PP PPP A G ++
Sbjct: 27 GLGPQRPQQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGGPSY 68
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 670 GPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GP GGG G G GGG G GG
Sbjct: 781 GPTGSSGGGGGGGNGGSGGGGGGGGGG 807
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 606 PRPPPXXXIPXPXPPP 653
P+PPP IP P PPP
Sbjct: 182 PKPPPPPPIPPPGPPP 197
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 606 PRPPPXXXIPXPXPPP 653
P+PPP IP P PPP
Sbjct: 182 PKPPPPPPIPPPGPPP 197
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +3
Query: 594 PQXXPRPPPXXXIPXPXPPPXSXXGPXCXXPRXCXXXPXFPXXXGCXXPP 743
P P PP +P P PPP S P C P P C PP
Sbjct: 78 PSCCPYVPPAP-LPPP-PPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPP 125
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 594 PQXXPRPPPXXXIPXPXPPPXSXXGPXCXXP 686
P P PPP +P P PPP P C P
Sbjct: 248 PVCMPPPPPPCPMPIPCPPPP----PACSCP 274
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G Q G GG G G GGG WGG
Sbjct: 189 GGWGGPAQRGGPGAYGGPGGGGQGGYG---GGNYGGGWGQQGGGGQGGWGG 236
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G Q G GG G G GGG WGG
Sbjct: 227 GGWGGPAQRGGPGAYGGPGGGGQGGYG---GGNYGGGWGQQGGGGQGGWGG 274
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 591 PPQXXPRPPPXXXIPXPXPPPXSXXGP 671
PP PPP +P P PPP + P
Sbjct: 1585 PPPLMGGPPPRLGMPPPGPPPPNGGPP 1611
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G GGG G G GGG G GG
Sbjct: 70 GGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -3
Query: 742 GGXXQPXXXGXXGXXXQXRGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
GG P G G G GGG G G GGG G GG
Sbjct: 70 GGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGG 120
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 688 RGXXQXGPXXDXGGGXGXGXXXXGGGRGXXWGG 590
RG + G GGG G G GG G GG
Sbjct: 294 RGGDRGGSRYSTGGGSGGGYRSGGGSSGGGGGG 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,631
Number of Sequences: 27780
Number of extensions: 208061
Number of successful extensions: 1409
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2678332928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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