Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G16
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    70   4e-13
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    38   0.003
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.93 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    29   1.2  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   4.9  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   8.6  

>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +1

Query: 376 SLLYNGSKFQGHQKSKGNS-YEVEVVLQHVDEENSYLCGYLKIKGXXXXXXXXXXXXDGE 552
           S L NG+KFQG QK   +S  EV V + HV+   S LCG++ +              + E
Sbjct: 5   SFLRNGAKFQGKQKGVSSSTLEVHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTTYFEAE 64

Query: 553 IISSKYPFLTR--KWDADEDVDRKHWSKFDLFVPYLKTFNSDSFD-YESLAKADYVFMRW 723
           II +++ F T+  +W A E++D +HW +        K         Y+ L++ + V+MRW
Sbjct: 65  IIGNRFTFETKWPEWGASEEIDNRHWKRLGALKSNGKDIPLRLIQPYDPLSR-ETVYMRW 123

Query: 724 KE 729
           KE
Sbjct: 124 KE 125


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +1

Query: 547 GEII--SSKYPFLTRKWDADEDVDRKHWSKFDLFV-----PYLKTFNSDSFDYESLAKAD 705
           GEI+  S K  F T KW A  ++D  +W K   F       +L+T  +    Y+   K  
Sbjct: 420 GEILDFSEKLNFATEKWSAPLEIDVCYWRKLAPFQNMDTNTFLETITNPKKLYKICQK-- 477

Query: 706 YVFMRWKE 729
           Y+FMRWK+
Sbjct: 478 YIFMRWKD 485


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 625 SKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEH 732
           SK++ F+  L+ ++ + FD  +L +  YVF    EH
Sbjct: 529 SKYNEFIKLLELYSQEVFDKNALVERCYVFFGSNEH 564


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 713 NT*SAFARDS*SNESELKVFKYGTNKSNLLQCFLSTSSSASHFLVRK 573
           NT S F  D  SNE     F     +  LL+C   T ++ +H L  K
Sbjct: 353 NTESGFTEDKKSNEDTSTNFVTIKQEKELLKCLCDTLNAIAHILFLK 399


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 650 YGTNKSNLLQCFLSTSSSASHFLV 579
           YG+N+  +LQ F S SSS+S  LV
Sbjct: 211 YGSNEEKILQEFESFSSSSSESLV 234


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 226 TVCHGTYSSLSSATVTFTRARSSSYGKIMPVKVDITPPPPAN 351
           TV H  Y S +  +    RAR+ S   +  +  D+ P PPA+
Sbjct: 196 TVQH-PYQSHNELSTNPARARAGSVPNLARIPSDVKPVPPAH 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,353
Number of Sequences: 5004
Number of extensions: 65871
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)