Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G16
(921 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041829-1|AAH41829.1| 300|Homo sapiens chromosome 17 open read... 215 2e-55
BC000636-1|AAH00636.2| 243|Homo sapiens C17orf39 protein protein. 215 2e-55
AK074284-1|BAB85036.1| 300|Homo sapiens protein ( Homo sapiens ... 213 6e-55
L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen ... 32 2.5
AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha ... 32 2.5
AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha ... 32 2.5
>BC041829-1|AAH41829.1| 300|Homo sapiens chromosome 17 open reading
frame 39 protein.
Length = 300
Score = 215 bits (525), Expect = 2e-55
Identities = 96/136 (70%), Positives = 105/136 (77%)
Frame = +1
Query: 328 ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYLKIKG 507
+ PPPP N++QPGV SLLY+GSKF+GHQKSKGNSY+VEVVLQHVD NSYLCGYLKIKG
Sbjct: 104 LIPPPPINTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKG 163
Query: 508 XXXXXXXXXXXXDGEIISSKYPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 687
+GEIIS K+PFLTRKWDADEDVDRKHW KF F Y K+FNSD FDYE
Sbjct: 164 LTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYE 223
Query: 688 SLAKADYVFMRWKEHF 735
L DYVFMRWKE F
Sbjct: 224 ELKNGDYVFMRWKEQF 239
Score = 52.8 bits (121), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 732 FLVPDHTIKDINGASFAGFXYICF 803
FLVPDHTIKDI+GASFAGF YICF
Sbjct: 239 FLVPDHTIKDISGASFAGFYYICF 262
>BC000636-1|AAH00636.2| 243|Homo sapiens C17orf39 protein protein.
Length = 243
Score = 215 bits (525), Expect = 2e-55
Identities = 96/136 (70%), Positives = 105/136 (77%)
Frame = +1
Query: 328 ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYLKIKG 507
+ PPPP N++QPGV SLLY+GSKF+GHQKSKGNSY+VEVVLQHVD NSYLCGYLKIKG
Sbjct: 47 LIPPPPINTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKG 106
Query: 508 XXXXXXXXXXXXDGEIISSKYPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 687
+GEIIS K+PFLTRKWDADEDVDRKHW KF F Y K+FNSD FDYE
Sbjct: 107 LTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYE 166
Query: 688 SLAKADYVFMRWKEHF 735
L DYVFMRWKE F
Sbjct: 167 ELKNGDYVFMRWKEQF 182
Score = 52.8 bits (121), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 732 FLVPDHTIKDINGASFAGFXYICF 803
FLVPDHTIKDI+GASFAGF YICF
Sbjct: 182 FLVPDHTIKDISGASFAGFYYICF 205
>AK074284-1|BAB85036.1| 300|Homo sapiens protein ( Homo sapiens
cDNA FLJ23704 fis, clone HEP10851. ).
Length = 300
Score = 213 bits (521), Expect = 6e-55
Identities = 95/136 (69%), Positives = 105/136 (77%)
Frame = +1
Query: 328 ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYLKIKG 507
+ PPPP N++QPGV SLLY+GSKF+GHQKSKGNSY+VEVVL+HVD NSYLCGYLKIKG
Sbjct: 104 LIPPPPINTQQPGVATSLLYSGSKFRGHQKSKGNSYDVEVVLRHVDTGNSYLCGYLKIKG 163
Query: 508 XXXXXXXXXXXXDGEIISSKYPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 687
+GEIIS K+PFLTRKWDADEDVDRKHW KF F Y K+FNSD FDYE
Sbjct: 164 LTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYE 223
Query: 688 SLAKADYVFMRWKEHF 735
L DYVFMRWKE F
Sbjct: 224 ELKNGDYVFMRWKEQF 239
Score = 52.8 bits (121), Expect = 2e-06
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 732 FLVPDHTIKDINGASFAGFXYICF 803
FLVPDHTIKDI+GASFAGF YICF
Sbjct: 239 FLVPDHTIKDISGASFAGFYYICF 262
>L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen
protein.
Length = 1388
Score = 32.3 bits (70), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 229 VCHGTYSSLSSATVTFTRARSS----SYGKIMPVKVDITPPPPANSKQP 363
V GT+ L +T F R R G+++P+ D +PPPPA S P
Sbjct: 1151 VIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPAD-SPPPPALSSNP 1198
>AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 32.3 bits (70), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 229 VCHGTYSSLSSATVTFTRARSS----SYGKIMPVKVDITPPPPANSKQP 363
V GT+ L +T F R R G+++P+ D +PPPPA S P
Sbjct: 1151 VIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPAD-SPPPPALSSNP 1198
>AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 32.3 bits (70), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 229 VCHGTYSSLSSATVTFTRARSS----SYGKIMPVKVDITPPPPANSKQP 363
V GT+ L +T F R R G+++P+ D +PPPPA S P
Sbjct: 1151 VIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPAD-SPPPPALSSNP 1198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,962,961
Number of Sequences: 237096
Number of extensions: 2087133
Number of successful extensions: 4894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4882
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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