Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G15
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/79 (26%), Positives = 22/79 (27%)
 Frame = +1

Query: 451  PFRXPGPX*PXPPGXGXGXTGXPPPXGGKXVSPXXGGXPGKNPLXXXPPKGXNPKKGXXP 630
            P   P    P  P    G    PPP     V     G P   P    PP    P  G  P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV-PTPSAGLPP 1228

Query: 631  GVIPXGXXPXKNLPXK*XP 687
              +P    P    P    P
Sbjct: 1229 VPVPTAKAPPVPAPSSEAP 1247


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -2

Query: 546 GXXFSXXGXGGXGXPXPXPGGRGLXGXGXPEG 451
           G  F   G GG G P P PGG G  G    EG
Sbjct: 187 GGGFGGFG-GGSGGPPPGPGGFGGFGGFGGEG 217


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 464 PXPXNPRPPGXGXGXPXPPXPXXENXXPPXXGXXP 568
           P P  P  P  G   P PP P      PP     P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,823
Number of Sequences: 5004
Number of extensions: 17966
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)