Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G14
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   220   3e-58
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   218   8e-58
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   1.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.9  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  220 bits (537), Expect = 3e-58
 Identities = 104/183 (56%), Positives = 124/183 (67%)
 Frame = +2

Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 286
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 287 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 466
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 467 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXY 646
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGH Y
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 647 SQT 655
           + +
Sbjct: 181 NNS 183


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  218 bits (533), Expect = 8e-58
 Identities = 103/183 (56%), Positives = 124/183 (67%)
 Frame = +2

Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 286
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 287 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 466
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 467 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXY 646
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGH +
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 647 SQT 655
           + +
Sbjct: 181 NNS 183


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 468 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 581
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 133 LLNISVGTHLSSLWQTSRVSHTVNL 59
           ++ +S G +  S+W + R+SHT+ L
Sbjct: 511 IIYLSFGVNKLSVWNSERISHTLEL 535


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 473  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 577
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,794
Number of Sequences: 5004
Number of extensions: 58201
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)