Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G14
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 206 2e-53
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 204 8e-53
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.014
05_02_0037 + 5883285-5884292 31 0.96
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 1.3
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 29 6.8
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 206 bits (503), Expect = 2e-53
Identities = 98/185 (52%), Positives = 121/185 (65%), Gaps = 1/185 (0%)
Frame = +2
Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 286
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 287 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 466
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 467 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHX 643
V +DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 644 YSQTK 658
+ + +
Sbjct: 181 HHKAR 185
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 204 bits (498), Expect = 8e-53
Identities = 97/184 (52%), Positives = 120/184 (65%), Gaps = 1/184 (0%)
Frame = +2
Query: 110 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 289
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 290 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 469
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 470 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHXY 646
+DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 647 SQTK 658
+ +
Sbjct: 287 HKAR 290
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.014
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 494 FEVILVDPSHKAIRRDPK 547
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.0 bits (52), Expect(2) = 0.014
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 347 YGKPKSHGVNQLKPTRN 397
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.96
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 190 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 342
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 418 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 290
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 748 KSLTVLDRCLLFAT*LKXVAXEPSCPA*ASLCLRVXMSLAETSGAATSRSQTTHLTMLMY 569
K L VL +C L + K ++ + S CL++ L++ G +TS + HL ++
Sbjct: 125 KFLDVLMQCSLEGSCGKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLI 184
Query: 568 SI 563
SI
Sbjct: 185 SI 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,773,203
Number of Sequences: 37544
Number of extensions: 426586
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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