Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G13
(996 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.036
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.33
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 7.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.036
Identities = 35/118 (29%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Frame = +2
Query: 605 GGARXTPNPPXXXXS----PXPLPRNX----PRXPXPKVPH----AXXPLFNXSXR--PP 742
G + P PP S P PL + P P P +P A PL N S PP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 743 TPPXPXR*XWACPXXPXSLPPKXLMGPGSHPLVXRXPPXXNXESRAXPPXXXLPXELP 916
P P A P P S PP MG + P + P P LP P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 31.5 bits (68), Expect = 0.19
Identities = 30/106 (28%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Frame = +2
Query: 629 PPXXXXSPXPLPRNXPRXPXPKVP----HAXXPLFNXSXR----PPTPPXPXR*XWACPX 784
PP S L N R P P P P+ N S PP PP + P
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
Query: 785 XPXSLPPKXLMGPGSHPLVXRXPPXXNXESRAXPPXXXLPXELPXR 922
P P S P R PP + SRA P +P R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLS-SSRAVSNPPAPPPAIPGR 398
Score = 30.3 bits (65), Expect = 0.44
Identities = 19/78 (24%), Positives = 24/78 (30%)
Frame = +1
Query: 622 PQPPXXXXKPXPPPPKXAXAAXPKGSPRXXXTX*XFXPXPHXXXPXSLXMGLPXXPXITX 801
P PP P PPPP+ A + + P P P P LP +
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 802 PQXXHGPRXPPVGXXXPP 855
P P + PP
Sbjct: 412 TSTPPVPTPPSLPPSAPP 429
Score = 29.9 bits (64), Expect = 0.58
Identities = 31/122 (25%), Positives = 38/122 (31%)
Frame = +2
Query: 623 PNPPXXXXSPXPLPRNXPRXPXPKVPHAXXPLFNXSXRPPTPPXPXR*XWACPXXPXSLP 802
P PP + P + PR P P + P N + +PP PP R A P
Sbjct: 255 PIPPPSNGTVSSPPNSPPR---PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
Query: 803 PKXLMGPGSHPLVXRXPPXXNXESRAXPPXXXLPXELPXRRLSKKRAXXPAXXPLXPXXX 982
P P PP N S + P P P R + P P
Sbjct: 312 PPP---PPPSRRNRGKPPIGNGSSNSSLP----PPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 983 PP 988
PP
Sbjct: 365 PP 366
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 30.7 bits (66), Expect = 0.33
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +2
Query: 620 TPNPPXXXXSPXPLPRNXPRXPXP--KVPHAXXPLFNXSXRPPTP-PXPXR*XWACPXXP 790
+PN P S P+ N P+ ++PH P+ N PT P P CP P
Sbjct: 172 SPNLPHQPISKPPVIPNLPKLQVHPNRLPH---PIHNHPYSSPTSYPPPLCPATYCPSNP 228
Query: 791 XSLPPKXLMGPGS 829
L P + P S
Sbjct: 229 PQLAPATAIAPSS 241
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = +2
Query: 674 PRXPXPKVPHAXXPLFNXSXRPPTPPXPXR*XWACPXXPXSLP--PKXLMGPGSHPLVXR 847
P P P P + L + PP P P + P P P P L P +
Sbjct: 125 PSAPAPPTPQSE--LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 848 XPPXXNXESRAXPPXXXLPXELPXRRLSK 934
PP A PP +P ++P LS+
Sbjct: 183 SPPSAPSLPSAVPP---MPPKVPPPPLSQ 208
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = +2
Query: 614 RXTPNPPXXXXSPXPLPRNXPRXPX--PKVPHAXXPLFNXSXRPPTPPXPXR*XWACPXX 787
R + P P P P + P P P +P + P + +PP A P
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
Query: 788 PXSLPPKXL 814
P +PP L
Sbjct: 198 PPKVPPPPL 206
Score = 27.1 bits (57), Expect = 4.1
Identities = 21/79 (26%), Positives = 27/79 (34%)
Frame = +2
Query: 737 PPTPPXPXR*XWACPXXPXSLPPKXLMGPGSHPLVXRXPPXXNXESRAXPPXXXLPXELP 916
PPTP R + P P PP P P+ + PP + S P P + P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAP---PIPSKAPPIPS--SLPPPAQPAAPVKSP 184
Query: 917 XRRLSKKRAXXPAXXPLXP 973
S A P + P
Sbjct: 185 PSAPSLPSAVPPMPPKVPP 203
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 611 ARXTPNPPXXXXSPXPLPRNXPRXPXPKVPHAXXPLFNXSXRPPT--PP 751
A +PP P +P P+ P P P + P+ N S RP + PP
Sbjct: 178 AAPVKSPPSAPSLPSAVPPMPPKVPPP--PLSQAPVANTSSRPSSFAPP 224
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.1
Identities = 23/77 (29%), Positives = 27/77 (35%)
Frame = +2
Query: 608 GARXTPNPPXXXXSPXPLPRNXPRXPXPKVPHAXXPLFNXSXRPPTPPXPXR*XWACPXX 787
GA P P P P+P P P PK A P+ S PP P P P
Sbjct: 1119 GAPPVPKPSVAAP-PVPVPSGAP--PVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPVPAP 1174
Query: 788 PXSLPPKXLMGPGSHPL 838
+PP G P+
Sbjct: 1175 SSGIPPVPKPAAGVPPV 1191
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/66 (33%), Positives = 23/66 (34%)
Frame = +2
Query: 623 PNPPXXXXSPXPLPRNXPRXPXPKVPHAXXPLFNXSXRPPTPPXPXR*XWACPXXPXSLP 802
P PP P P P P P P A P+ PP PP P A P P P
Sbjct: 733 PPPPPAVIVPTPAPA-----PIPVPPPA--PIMGG---PPPPPPPPGVAGAGPPPPPPPP 782
Query: 803 PKXLMG 820
P G
Sbjct: 783 PAVSAG 788
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 647 SPXPLPRNXPRXPXPKVPHAXXPLFNXSXRPPTPPXPXR 763
S PLP R P +P L S +PP PP R
Sbjct: 46 SKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,673
Number of Sequences: 5004
Number of extensions: 14795
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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