Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G12
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.058
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 30 0.54
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.72
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.95
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.95
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 2.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.9
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 27 3.8
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 27 3.8
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.7
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 8.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 8.8
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 8.8
SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po... 26 8.8
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.1 bits (72), Expect = 0.058
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 232 KCENLMNIVVESRKRFGKMCSEY-----ELKSSSMENKILNLKIESFSNYRFKPKNSVPA 396
KCENL S RF + E EL S + EN+ + +IES + + + S +
Sbjct: 1420 KCENLKK---SSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASS 1476
Query: 397 ISGEDTKE-IEDFTVQLLERQKRIDELKNKLRNTQT 501
+ + TKE E + +K + + KN+L + Q+
Sbjct: 1477 DAEQITKEQFEQLKSEKERTEKELADSKNELEHLQS 1512
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 328 KILNLKIESFSNYRFKPKNSVPAISGEDTKEIEDFTVQLLERQKRIDELKNKLRNTQTVV 507
K +N++I+ + YR + + V + K DF+++L E + R L ++ V
Sbjct: 228 KRINMQIQQVNTYRIRMREIVETLGRLSNKHDLDFSIKLAEAKNRHVRLSERILRLAIKV 287
Query: 508 LQLRN 522
LR+
Sbjct: 288 HVLRH 292
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.5 bits (63), Expect = 0.72
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 539 LPPILSFLSCKTTVCVFLNLFFNSSIRFCR-SNSWTVKSSISFVSSPLIAGTEF 381
+PP S SC T VC+FL+ N I R S + T + S+++ + +EF
Sbjct: 175 VPPKRSSSSCVTYVCLFLDSNSNPRINVYRWSKTETFSDASSYITFSIPVPSEF 228
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.1 bits (62), Expect = 0.95
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Frame = +1
Query: 250 NIVVESRKRFGKMCSEYEL-KSSSMENKILNLKIESFSNY--RFKPKNSVPAISGEDTK- 417
+++ +++ R E E KSS + + +K+ S + K K +V + S ED K
Sbjct: 678 DLLTQTKDRLMHQIGEIEYQKSSCVITESDTVKLHSLESEISLLKDKYTVVSRSVEDKKK 737
Query: 418 EIEDFTVQLLERQKRIDELKNKLRN--TQTVVLQLRNDKIGGKL 543
EI + + E+Q + EL+ +LRN LQ++ +K+ K+
Sbjct: 738 EIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVEEKI 781
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.95
Identities = 20/79 (25%), Positives = 43/79 (54%)
Frame = +1
Query: 367 RFKPKNSVPAISGEDTKEIEDFTVQLLERQKRIDELKNKLRNTQTVVLQLRNDKIGGKLR 546
+ + + + A ++ +++E ++L E+Q+R +E KLR + +LR ++I K R
Sbjct: 112 KLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREKEE-AQRLRQEQILNKER 170
Query: 547 QPVDAELMLENAKSKQLQQ 603
Q +L L N +K +++
Sbjct: 171 Q----QLKLNNFFTKGVEK 185
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 301 ELKSSSMENKILNLKIESFSNYRFKPKNSVPAISGEDTKEIEDFTVQLLERQKRIDELKN 480
E+ EN+ L LKI+S + K K+ + E + I+ + V + E IDE +N
Sbjct: 521 EIHDLREENEGLTLKIDSIT----KEKDR---LINELEQRIKSYEVNVSELNGTIDEYRN 573
Query: 481 KLRNTQTVVLQLRN 522
KL++ + ++ N
Sbjct: 574 KLKDKEETYNEVMN 587
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.9
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Frame = +1
Query: 214 DDMLETKCENL----MNIVVESRKRFGKMCSEYELKSSSME--NKI-LNLK-IESFSNYR 369
+ L+T CENL M ++ +K K ++ S E K+ L+LK + S N
Sbjct: 817 ESKLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSELKEVNGKLSLDLKNLRSSLNVA 876
Query: 370 FKPKNSVPAISGEDTKE---IEDFTVQLLERQKRIDELKNKLRNTQTVVLQLRNDKIGGK 540
+ + E +K +E + QL K + E + +L +T+ L +R DK+ GK
Sbjct: 877 ISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSL-EAEKQLLHTENEELHIRLDKLTGK 935
Query: 541 LR 546
L+
Sbjct: 936 LK 937
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 406 EDTKEIEDFTVQLLERQKRIDELKNKLRNTQTVVLQLRNDKIGGKLRQPVDAELMLENAK 585
E KEI + + +L + Q ++LKN+L + + +L+ D + K + E L N +
Sbjct: 1373 ETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEI-RLKEDVLKEKESLIISLEESLSNQR 1431
Query: 586 SKQ 594
K+
Sbjct: 1432 QKE 1434
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 337 NLKIESFSNYRFKPKNSVPAISGEDTKEIEDFTVQLLERQKRIDELKNK 483
NLKI KP+N P +D + IE+F ++L Q+ + L+ K
Sbjct: 133 NLKIILADIDMSKPENQNPQQQLDDGEYIENFPIKLSSLQEELFSLEKK 181
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -1
Query: 690 YILPHSQIHISRLISSKLCHLVT-IFIASKLLQLFTFSVL-QH-*LGIDWLTQFAANFIV 520
++LPH IH++RLI L T I S+ ++ + S+L +H L + + A+ ++
Sbjct: 275 FLLPHQVIHMNRLIEDGRHFLETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVI 334
Query: 519 SQLQNNSL 496
+ N S+
Sbjct: 335 QERLNASI 342
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 205 EMEDDMLETKCENLMNIVVESRKRFGKMCSEYELKSSSMENKILNLKIESFSNYRFKPKN 384
+ E+D + N++ IVV +RK M EL S +E+ + LK + +++ K
Sbjct: 9 QAEEDEIVKSLNNVLKIVVTARKCLDDM-KPIELPSELVESPLSMLKDVATLIHQYTTKL 67
Query: 385 SVPA 396
SV A
Sbjct: 68 SVAA 71
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 317 DELLSSYSLHIFPKRFLDSTTMF 249
+E L+SYSLH++P++ T+ +
Sbjct: 383 EEPLNSYSLHVYPQKITAPTSPY 405
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.8
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 821 PGSAQHVSPSILLYHIPFFAHSLLTHXVLYAFQSIILLRST-PSYISFHIHRFISHALSP 645
PG+ H S LLY+I S LT L Q+I R T P + +H I+ +P
Sbjct: 201 PGT-YHSSKLELLYYIS----STLTLTSLD--QNIRCTRCTIPKRVITSMHNNIAELYNP 253
Query: 644 VNCVIWLPY 618
++C+ LPY
Sbjct: 254 ISCIKSLPY 262
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 EMEDDMLETKCENLMNIVVESRK-RFGKMCSEYELKSSSME 324
+MEDD +CE + E RK R GK+ + + M+
Sbjct: 921 DMEDDQFSQRCERMALREAERRKLRHGKLQKHLDETKADMQ 961
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 8.8
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Frame = +1
Query: 217 DMLETKCENLMNIVVE-SRKRFGKMCS-----EYELKSS-SMENKILNLKIESFSNY-RF 372
D L K + + E SRK C+ E E+K + ++ + L L FS+Y
Sbjct: 288 DSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKEESLTLA-NKFSDYDEI 346
Query: 373 KPKNSVPA---ISGED-TKEIEDFTVQLLERQKRIDELKNKLRNT 495
K + SV SGE T E QLL+R+K++ E KLR+T
Sbjct: 347 KRELSVLKQIEFSGEHATHENTSLESQLLKREKQLSEELAKLRST 391
>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 95
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 578 FSNINSASTG*RSLPPILSFLSCKTTVCVFLNLFFNS 468
FSN+ +A+T S P ++F+ V +L F N+
Sbjct: 55 FSNLLNANTSPSSSPTSMAFMGIAALVSTYLPQFLNT 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,758
Number of Sequences: 5004
Number of extensions: 74081
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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