Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G10
         (948 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.3  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    31   1.8  
03_05_0128 - 21076504-21076974,21077075-21077311,21077558-210776...    29   7.1  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.1  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    28   9.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.4  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 520 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFDLPLTDTVAYXI 696
           CWR  +        T  D Q    +    +KD    P + PSC L+F +PL   + Y +
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIF-IPLLQPLHYSL 340


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 627 PPGSSLVRSPVRPAAYGYCRLXDTCPPFLPFGKRG 731
           PPG  +  SP+RPAA  + R     P  +PF  RG
Sbjct: 57  PPGPPVFSSPLRPAAVPF-RATPASPQPVPFASRG 90


>03_05_0128 -
           21076504-21076974,21077075-21077311,21077558-21077682,
           21082636-21082885
          Length = 360

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 612 RYQAFPPGSSLVRSPVRPAAYGYCRLXDTC 701
           RY  F   ++L+R   RPAAYG+      C
Sbjct: 267 RYAVFDSSAALLRYIERPAAYGFAEARAAC 296


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +3

Query: 537  RLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVRPAAYGYCRLXDTCPPFLP 716
            R RP  E   +  SS RWRNPT +     F     L+RS   P      R+  +    + 
Sbjct: 1333 RHRPLTEGSPHPLSSARWRNPTKM--QGMFMHKDLLLRSRKNPILAANLRVQISVQASII 1390

Query: 717  FGKRGAFS 740
             G +GA S
Sbjct: 1391 MGLQGAVS 1398


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,294,821
Number of Sequences: 37544
Number of extensions: 476482
Number of successful extensions: 1324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)