Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G09
         (908 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027713-1|AAH27713.1|  804|Homo sapiens heterogeneous nuclear r...    31   5.8  
BC014232-1|AAH14232.1|  756|Homo sapiens HNRPUL1 protein protein.      31   5.8  
BC009988-1|AAH09988.2|  756|Homo sapiens HNRPUL1 protein protein.      31   5.8  
BC002564-1|AAH02564.1|  856|Homo sapiens heterogeneous nuclear r...    31   5.8  
AK127057-1|BAC86806.1|  752|Homo sapiens protein ( Homo sapiens ...    31   5.8  
AK021455-1|BAB13831.1|  390|Homo sapiens protein ( Homo sapiens ...    31   5.8  
AJ007509-1|CAA07548.1|  856|Homo sapiens E1B-55kDa-associated pr...    31   5.8  

>BC027713-1|AAH27713.1|  804|Homo sapiens heterogeneous nuclear
           ribonucleoprotein U-like 1 protein.
          Length = 804

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 757 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 787


>BC014232-1|AAH14232.1|  756|Homo sapiens HNRPUL1 protein protein.
          Length = 756

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 709 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 739


>BC009988-1|AAH09988.2|  756|Homo sapiens HNRPUL1 protein protein.
          Length = 756

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 709 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 739


>BC002564-1|AAH02564.1|  856|Homo sapiens heterogeneous nuclear
           ribonucleoprotein U-like 1 protein.
          Length = 856

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 809 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 839


>AK127057-1|BAC86806.1|  752|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45114 fis, clone BRAWH3034775, highly  similar
           to Homo sapiens E1B-55kDa-associated protein 5
           (E1B-AP5). ).
          Length = 752

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 705 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 735


>AK021455-1|BAB13831.1|  390|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11393 fis, clone HEMBA1000591, weakly similar to
           PTB-ASSOCIATED SPLICING FACTOR. ).
          Length = 390

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 343 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 373


>AJ007509-1|CAA07548.1|  856|Homo sapiens E1B-55kDa-associated
           protein protein.
          Length = 856

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 481 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 567
           P PS+ QY+QYA    QY   Q  + PYYG+
Sbjct: 809 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 839


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,722,248
Number of Sequences: 237096
Number of extensions: 1841619
Number of successful extensions: 4170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4166
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)