Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G09
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    28   8.0  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    28   8.0  

>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 490 SHPQYEQYAGPQYGAPQHGYDPYYG 564
           SH  +  + G  YG    GY PYYG
Sbjct: 31  SHEHHHHHHGGYYGGGYGGYQPYYG 55


>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 8/27 (29%), Positives = 22/27 (81%)
 Frame = +3

Query: 525 IRRTPARLRPVLRPLILNNATAKEINL 605
           +++TP+R+ P+  PL++++A++  ++L
Sbjct: 47  LKKTPSRMEPMKMPLLISHASSTNLDL 73


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 8/27 (29%), Positives = 22/27 (81%)
 Frame = +3

Query: 525 IRRTPARLRPVLRPLILNNATAKEINL 605
           +++TP+R+ P+  PL++++A++  ++L
Sbjct: 47  LKKTPSRMEPMKMPLLISHASSTNLDL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,886
Number of Sequences: 27780
Number of extensions: 288033
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)