Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G09
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   5.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 187 YSDLDEEDQHLFRAAYDTPSYDHEEQE 267
           Y    +EDQH   A   T SYD+   E
Sbjct: 109 YPPFWDEDQHRLYAQIKTGSYDYPSPE 135


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 88  DYKLQITFKQNILDQILR 35
           +Y +Q+TF++  LD+ LR
Sbjct: 79  EYSVQLTFREQWLDERLR 96


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 88  DYKLQITFKQNILDQILR 35
           +Y +Q+TF++  LD+ LR
Sbjct: 79  EYSVQLTFREQWLDERLR 96


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 243 GSVVCSSEQMLIFFVQIRISRHVSW 169
           GSVVCS  Q ++F ++     +V+W
Sbjct: 163 GSVVCSLPQTIVFHLETH--PNVTW 185


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 106 YYSITMIAKLVIGILFLNAVSP 171
           YY++T I   ++GI+ +  + P
Sbjct: 141 YYTVTTILAAIVGIVMVLIIHP 162


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 318 PKTAFQ--QVQLVEGYFVVLLFLVIVAGSVVC 229
           P+  F    V LV   F++L+FL +    +VC
Sbjct: 16  PENTFSLLSVLLVGFLFLILIFLSVAGNILVC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,988
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)