Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G07
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.59 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPPG        PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPP         PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPP         PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPP         PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 584 PPPPPKXXXXPXXXKXXKKXKKPPKXXGXPXPPP 685
           PPPPP     P           P    G P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 520 PPPPPPXGXXXGGAP 476
           PPPPPP G    G P
Sbjct: 762 PPPPPPPGVAGAGPP 776



 Score = 24.6 bits (51), Expect(2) = 1.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 520 PPPPPPXGXXXGGA 479
           PPPPPP     GG+
Sbjct: 777 PPPPPPPAVSAGGS 790



 Score = 22.6 bits (46), Expect(2) = 1.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 526 KXPPPPPP 503
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPPXXK 608
           PPPPG        PPPPP   K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVK 34



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPP         PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 543 PPPPGXXXXXXXXPPPPPP 599
           PPPP         PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 25.0 bits (52), Expect(2) = 0.59
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 556 PGGGGFXXXKKXPPPPPP 503
           P   GF    + PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 23.0 bits (47), Expect(2) = 0.59
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 520 PPPPPPXG 497
           PPPPPP G
Sbjct: 24  PPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 529 KKXPPPPPPXGXXXGGAP 476
           KK PPPPPP      G P
Sbjct: 308 KKRPPPPPPPSRRNRGKP 325



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 556 PGGGGFXXXKKXPPPPPPXGXXXGGAP 476
           P G G       PPPPPP     G  P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIP 352


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
 Frame = -2

Query: 700 GLXXXXGGXG----GPRXFGXFFXFFXPFXXXXXXXXFGGGGGGXXXXXLXXPGG-GGF 539
           G     GG G    GP  FG F  F            FGGG GG         GG GGF
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.142    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,953
Number of Sequences: 5004
Number of extensions: 20569
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)