Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G06
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.40 
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   2.8  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.7  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   4.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   6.5  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
 Frame = +1

Query: 382 EDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSLKANDIETSGILTLISVVF-------- 537
           E+ D Y L  ++     +S G++ I ++C    L  N   +  I++ +S  F        
Sbjct: 32  ENTDTYALTPLFYWIRSTSVGLLLITIIC-HLFLLLNIFISIPIISHLSPGFMPVGFTAL 90

Query: 538 ---LLATFAVYTYFPNL--RDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGF 702
              LLA   ++ Y PN   R  Q +    ++I + + FLS  +L+   G+R +   L  F
Sbjct: 91  AAILLAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLS-PILRHREGWRSNAFVLWAF 149

Query: 703 VVYTWMIAT 729
           ++  W++ T
Sbjct: 150 LMSLWIVIT 158


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 549 FRCVHIFSKFKRPPRLMLHVYEH 617
           +RC      F RP  L +H Y H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSH 490


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 409 AMYKNGT-DSSSGIISIALVCFEPSLKANDI 498
           A+YK G   +  G I I  VC +P+L+ N +
Sbjct: 134 ALYKTGLLKNPKGFIHIHFVCVDPALQGNGV 164


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 569 KYVYTAKVAKRNTTEINVSIPLVSMSLALSDGSKHTSAMEIIPELESVP 423
           KY +   +      ++ + IP +S SL L DGS       ++ +  S+P
Sbjct: 239 KYGFVVIIIVGELNDVELKIPAISHSLKLKDGSILVLRSSLLHQWYSLP 287


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 604 CNISLGGLLNLENMCTQRKSLKETLQRLMLVFRLSQC 494
           C + +G  +    +C +RKS+++ +Q L      SQC
Sbjct: 693 CQLLVGDYILSPKICVERKSIRDLIQSLSNGRLYSQC 729


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 420 FVHRTETILIRIF--GENKIWSVLSGHLISIQD 328
           F+H   ++  R+F   E+  WS+  GH++ IQD
Sbjct: 797 FLHSGFSVGERVFISDEHGHWSLAKGHIVHIQD 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,321
Number of Sequences: 5004
Number of extensions: 85607
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)