Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G06
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    30   3.0  
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    30   3.0  
12_01_0872 + 8326873-8327475,8328246-8328575                           29   6.9  
11_08_0063 - 28125067-28125969                                         29   6.9  
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547...    29   6.9  

>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 475 PSLKANDIETSGILTLISVVFLLATFAVYTYFPNLRDLQGLCYMSMSISMALGFLSLGVL 654
           P++ A   +++G       V  L      T+ P   D+Q LC  S S+   LGF   G+L
Sbjct: 135 PAILALTAQSAGAAVADVTVDALVAQNSITHQPLAADMQSLCGFSSSVGALLGFSISGLL 194

Query: 655 QLNTG 669
             + G
Sbjct: 195 VHSMG 199


>01_06_0481 -
           29646245-29646371,29646474-29646556,29646672-29646752,
           29646843-29646899,29647007-29647094,29647304-29647374,
           29647457-29647585,29647662-29648051,29648332-29648517,
           29648612-29648692,29648787-29648879,29648966-29649086,
           29649200-29649409,29649560-29649727,29649898-29650065,
           29650144-29650311,29650453-29650620,29650738-29650905,
           29651023-29651190,29651567-29651734,29652391-29652558,
           29652645-29652812,29655720-29655887,29656069-29656236,
           29656391-29656558,29656670-29656837,29657525-29657664,
           29658033-29658221,29658243-29658315,29658379-29658452,
           29658535-29658654,29658718-29658738,29658794-29658999,
           29659094-29659271,29660066-29660126,29660232-29660341,
           29660427-29660558,29661091-29661258,29661339-29661465,
           29661794-29661831,29663321-29663422,29663505-29663562,
           29663659-29663760,29663844-29663990,29664098-29664234,
           29664313-29664462,29664561-29664720,29665820-29665878,
           29666025-29666181,29666288-29666433,29666523-29666666,
           29667242-29667376
          Length = 2344

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 705 RVHLDDSNILLDERDCITYVVQCSTLLAWQKRIXAISVVQLLRVGRDLXLIXV 863
           R H D+SN L  +R  +TY  QC    AW++R+    + QL    RD   + V
Sbjct: 850 RCHRDNSNYLKLKRAALTY--QC----AWRRRVARRELRQLRMAARDTQALKV 896


>12_01_0872 + 8326873-8327475,8328246-8328575
          Length = 310

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 505 SGILTLISVVFLLATFAVYTYFPNLRDLQGLCYMSMSISMALGFLSLGVLQLNT 666
           +G++TL++ + LL + + Y Y P +   +G+ +   S ++ALG L +    L T
Sbjct: 28  AGVVTLVTSILLLLSGSTYGYGPKVCTGRGVFF---SPTIALGLLLMAAFILGT 78


>11_08_0063 - 28125067-28125969
          Length = 300

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 459 RNGDNSRTR-VCTVFVHRTETI-LIRIFGENKIWSVLSGHLIS 337
           RN D    R  C   ++ T  I  + +FG  + W+ LSGH ++
Sbjct: 43  RNKDEGSLREACDTGIYNTVIISFLTVFGHGRYWADLSGHPVA 85


>08_02_0204 -
           14253258-14253383,14253685-14253878,14254029-14254743,
           14254811-14254837,14258779-14258838,14263174-14264844,
           14267402-14267518,14267593-14267763,14270248-14270346,
           14271684-14271770,14272392-14272475,14272929-14273068,
           14274414-14274494,14275492-14275680,14275986-14276022
          Length = 1265

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +1

Query: 238 GVIISPRGKCGTE-PMVSMNCSNGRL-LLKDIILNGNKVSTQDTPDFVFAEDPDEYCLGA 411
           G  + P   CGT   + +    +G + +L D   + NK+    TP FV      E C   
Sbjct: 115 GAYVDPLSDCGTPLHLAATEGQDGTMKILLDHKADYNKMVLGMTPLFVAINHASEKCAKL 174

Query: 412 MYKNGTDSSSGIISIAL 462
           + K G D +   +  AL
Sbjct: 175 LVKAGADINGDYVLTAL 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,716,560
Number of Sequences: 37544
Number of extensions: 529687
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)