Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G06
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    35   0.094
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     35   0.094
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    31   1.5  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    31   1.5  
AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    29   6.2  

>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 559 YTYFPNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIA 726
           Y    NL+  Q +CY+S++  +A+   S GVL +    R+++ TL  F V  W+ A
Sbjct: 223 YLTSENLKTTQAICYLSIAQFLAMFMYSGGVLLMRKN-RENIPTLIYFNVIVWVYA 277


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 559 YTYFPNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIA 726
           Y    NL+  Q +CY+S++  +A+   S GVL +    R+++ TL  F V  W+ A
Sbjct: 223 YLTSENLKTTQAICYLSIAQFLAMFMYSGGVLLMRKN-RENIPTLIYFNVIVWVYA 277


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 LAFKQKKHEGNYFIRVIV-LWNRCIREAMLSRWRNNFTTG*MRHRAN 281
           L FKQK    +    + +  WN    E +L  W+ NFT     H+AN
Sbjct: 575 LRFKQKPGRNSMKTGLDMDAWNETAAEQVLQAWQRNFTKSLYNHKAN 621


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 338 PFKIISFNSNLPLLQFMLTIGSVPHLP 258
           PF + +FN NLPL+  +L  G+  +LP
Sbjct: 367 PFMLAAFNQNLPLMTLLLDAGADVNLP 393


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 338 PFKIISFNSNLPLLQFMLTIGSVPHLP 258
           PF + +FN NLPL+  +L  G+  +LP
Sbjct: 365 PFMLAAFNQNLPLMTLLLDAGADVNLP 391


>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 560 YTAKVAKRNTTEINVSIPLVSMSLALS 480
           +T+K AKR+  E+N+++  ++M L+ S
Sbjct: 32  FTSKAAKRHVEELNINVSYINMFLSTS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,791,531
Number of Sequences: 27780
Number of extensions: 489847
Number of successful extensions: 1359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)