Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G05
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   2.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.8  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   8.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   8.5  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 233 HDWDQKPSHAKNGSAYDVDY*GSEK 159
           HD  ++PSH K+ SA  +D   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 16  TINTIVEFLKILESYREIV*SIN 84
           T+NTI  +L +++S REI  ++N
Sbjct: 460 TVNTISNYLNVIDSVREIALTVN 482


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 284 SFSPVVLREFNG--RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHSGF 433
           S+S V+    N   R++ IKV  +RH        Y+++ K   C  S H GF
Sbjct: 109 SYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALCILSKHPGF 160


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 260 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 355
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 143  VTVTSHQDIQYKLTLDNLYLFIDQTISR*LSKIL 42
            + +T+H ++QY L+L N  L I+    R L+  L
Sbjct: 907  IIITAHSELQYYLSLMNQQLPIESQFMRRLADCL 940


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,318
Number of Sequences: 5004
Number of extensions: 52893
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)