Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G04
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    66   9e-12
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.6  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    27   4.9  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = +2

Query: 296 RLAK*CRVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 466
           R  K   VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 65  REGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +3

Query: 99  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLV*GTKTKIQCKIHAYSQRR 257
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 18/38 (47%), Positives = 32/38 (84%)
 Frame = +1

Query: 196 PWSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKV 309
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKI 69


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 353 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKYTEET 523
           I R+KA GAT  +   P K ++  +K   D  A ++     ++  + K+   YT +T
Sbjct: 724 IGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELHTGNKMVTIPKENLLYTTKT 780


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -1

Query: 571 YLS*KLLV*EASHGCGSFLGVFTLVFAKRSQSALCSAIEDCFAVFIHLQLDNDTL*RVN 395
           YLS  L++   + GC +F G+F L F  R    +  A+      FI+  + N  L R N
Sbjct: 301 YLS-ALILDAVNFGC-TFGGLFVLEFFGRRMPLIIGALWQSITFFIYAAVGNRALTRKN 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,607
Number of Sequences: 5004
Number of extensions: 44712
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)