Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_G03
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    29   1.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   5.8  

>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 214 DTDCQEDLSLQEFLELLH 267
           D DCQE L+L  FLE LH
Sbjct: 55  DWDCQESLNLDAFLENLH 72


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/63 (25%), Positives = 36/63 (57%)
 Frame = +1

Query: 28  REFLKIYXTLASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPEANSMEAQLEH 207
           ++F + +  L  +L  +I  +  +L+E +   KSR+  +V+ E   L  +AN ++++L  
Sbjct: 716 KQFERDHIPLKDEL-VTITGETTDLQESMHH-KSRMLELVVLELHTLEQQANDLKSELSS 773

Query: 208 DLD 216
           ++D
Sbjct: 774 EMD 776


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 68   WELRSETNVWNLKK-YYKA*NR 130
            W   S+  VW +KK YYK+ N+
Sbjct: 1191 WLENSDPRVWQIKKDYYKSQNQ 1212



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +2

Query: 188  WKHSWNMIWTQTAKRICPF 244
            W +  ++++ +T KR+ P+
Sbjct: 1251 WNYWHDIVFVETVKRVPPY 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,195
Number of Sequences: 5004
Number of extensions: 35515
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)