Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_G01
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 53 6e-08
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 32 0.13
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 32 0.13
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.17
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.17
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 31 0.23
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 31 0.30
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 30 0.52
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 30 0.52
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 29 0.91
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 29 0.91
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.91
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 29 0.91
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 1.2
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 1.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 28 1.6
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 28 1.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.6
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 2.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 28 2.1
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 2.1
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 28 2.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 2.8
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 3.6
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 27 3.7
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 4.8
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb... 27 4.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 4.8
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 4.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 4.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.8
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 4.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 6.4
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 6.4
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 6.4
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 6.4
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 6.4
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 8.5
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 8.5
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 174 SDEVNFLVYRYLQESGFHHSAYSFGIESHISQSNIN-GALVPPAALLNIIQKGLQYTAAE 350
+++VN++++RYL+E G+ H+ ++F E+ I + G+ AL+ I+QKGLQY E
Sbjct: 3 TNQVNYIIWRYLKECGYSHTKFAFERETGIQNLDKQWGSTCQVGALVEILQKGLQYVELE 62
Query: 351 ITLGDNGTENRLTESLSL 404
DN + N S+
Sbjct: 63 KHYVDNHSSNEEASKTSI 80
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 646 LKYLFVHGN--PSTDLLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKG 792
L Y F HG + L G S R+ D+S TP ++LR+C+QKG
Sbjct: 175 LSYCFNHGILVQAFSPLTRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKG 225
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
N S LLASGS D T RIWD+
Sbjct: 476 NSSGSLLASGSWDKTVRIWDI 496
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDMS 735
+PS DL+ S S D T R+WD+S
Sbjct: 146 HPSEDLIVSASLDQTVRVWDIS 167
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDMSD 738
NP LL SGS D T RIW++ D
Sbjct: 147 NPLGTLLVSGSWDETVRIWNLQD 169
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
NP + LASGSGD T RIW++
Sbjct: 516 NPFSRQLASGSGDRTIRIWNV 536
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 676 STDLLASGSGDSTARIWDMSDN 741
+T +LASG+ DS R+WD++ +
Sbjct: 158 NTWVLASGADDSRVRLWDLNSS 179
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 30.7 bits (66), Expect = 0.30
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 685 LLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGNLLGN 864
+LASGS D T R+WD+ ++ + + T + V L W D L +
Sbjct: 204 VLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLAS 263
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDMSDN 741
N + +LASGS DS R+WD N
Sbjct: 107 NEDSSILASGSFDSKVRLWDCRSN 130
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 685 LLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKDVTSLDWNC 843
LL SGS D++ +WD+S + P++L+ + G E + + T + W C
Sbjct: 146 LLLSGSTDASLIVWDVS----SQPSRLLYKLTGHSRGIECITRQPNTDIFWTC 194
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.1 bits (62), Expect = 0.91
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
N S+ L+ SG+ D+T R+WD+
Sbjct: 61 NKSSTLMVSGAADNTMRLWDV 81
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 29.1 bits (62), Expect = 0.91
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
+P+ ++LA+G D+TA++WD+
Sbjct: 309 HPNGNILATGGQDTTAKVWDI 329
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 670 NPSTDL-LASGSGDSTARIWD 729
+PST L +GSGD TAR+WD
Sbjct: 143 SPSTSSRLVTGSGDFTARLWD 163
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 685 LLASGSGDSTARIWDMSDNPT--TTPNQLVLRHCIQKGGTE--VPSNKDVTSLDWNC-DG 849
LLASGS D+T RIW++ T C++ GG S+ D T W+ DG
Sbjct: 241 LLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
Query: 850 NLL 858
L
Sbjct: 301 KCL 303
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 673 PSTDLLASGSGDSTARIWD 729
P ++A+GS D+T R WD
Sbjct: 187 PDASIIATGSMDNTIRFWD 205
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.91
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 676 STDLLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKDVTSLDWN 840
S+ + + DSTARIWD++ T +QL + + +G S VTS WN
Sbjct: 209 SSQIFLTTGYDSTARIWDVN----RTKSQLEVFVHVPEGSHTGLSRIPVTSCAWN 259
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 688 LASGSGDSTARIWDM 732
+ SGSGD TAR+WD+
Sbjct: 417 IVSGSGDRTARLWDV 431
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
+P + +L SGS D T ++W++
Sbjct: 493 SPDSSILLSGSLDKTIKVWEL 513
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
+P ASGSGD ARIW +
Sbjct: 589 SPDGRQFASGSGDLRARIWSI 609
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 682 DLLASGSGDSTARIWDMS 735
+LL SGS D+T ++WD+S
Sbjct: 268 NLLVSGSADTTLKLWDLS 285
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 688 LASGSGDSTARIWDMS 735
L SGS DST RIWD++
Sbjct: 602 LISGSADSTIRIWDLN 617
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 682 DLLASGSGDSTARIWDMS 735
D+L SGS DS+ RIW +S
Sbjct: 518 DILVSGSYDSSIRIWRVS 535
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 643 NLKYLFVHGNPSTDLLASGSGDSTARIWDMS 735
+L+ V P ++ SGS D + R+WD+S
Sbjct: 547 SLRIYSVLYEPERNICISGSMDKSIRVWDLS 577
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 577 CLWTWTHQLKFQQTKLLY*EVMNLKYLFVHGNPSTDLLASGSGDSTARIWDM 732
CLW + Q T LL E + V +PS D L S S D+T R+WD+
Sbjct: 248 CLWKAS-----QSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDV 294
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 661 VHGNPSTDLLASGSGDSTARIWD 729
V +PS LLASGS D+ + WD
Sbjct: 212 VDWHPSKGLLASGSKDNLVKFWD 234
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 601 LKFQQTKLLY*EVMNLKYLFVHGNPSTDLLASGSGDSTARIWDMSDN 741
++F + L N L V+ +P+ LAS D T RIWD + N
Sbjct: 207 IRFPKLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSN 253
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = -1
Query: 372 FHYRLMLFPLQCIVILFV*YSIMLLEE--QELR*CYFVICVIQFQKNMLNGGNLTLVSSG 199
F LML + +++L S +L +++ V+CVI+ +N+L +
Sbjct: 679 FKLSLMLHEKEEVLLLKTNVSCVLANHGYNDIKFEEMVLCVIKGDQNLLEHNSNNNAKLA 738
Query: 198 TQESLLRH**NSFCISNGNHNNNILSVVACSNYFRS 91
ESLL N C ++ IL+++ F S
Sbjct: 739 LNESLLCSWENLLCYRRAEDDSRILTIIESWTIFIS 774
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 643 NLKYLFVHGNPSTDLLASGSGDSTARIWDMSD 738
N + V +P+ A+GSGD ARIW D
Sbjct: 554 NNSVISVAVSPNGHCFATGSGDLRARIWSYED 585
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDM 732
+P+ D+L + D+ AR+WDM
Sbjct: 256 HPTLDVLVTAGRDAVARVWDM 276
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 688 LASGSGDSTARIWDMSDNPTTT 753
+ +GS DST R+WD++ T T
Sbjct: 304 VVTGSMDSTIRLWDLAAGKTLT 325
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 673 PSTDLLASGSGDSTARIWDMS 735
P +G+GD T +IWD++
Sbjct: 173 PGNQWFCTGAGDRTIKIWDLA 193
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 676 STDLLASGSGDSTARIWDMSDNPTTT 753
S+ + S S D+T IWD +P TT
Sbjct: 208 SSSVFISASADNTVGIWDFERSPETT 233
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDMSDNPTTTPNQLVLRH 777
NPS DLL SGS D+ + + N P V H
Sbjct: 661 NPSGDLLLSGSEDTKVTLLEFQSNGNIIPLNSVKFH 696
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 709 YHLIHWPVNPCLGSHAQI 656
YH H PVN C+G +I
Sbjct: 834 YHRFHSPVNGCIGPITKI 851
Score = 20.6 bits (41), Expect(2) = 3.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 859 PKDFHRNSSPV 827
P+D+HR SPV
Sbjct: 831 PQDYHRFHSPV 841
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 353 YFRCSVL*SFLYNIQ*CCWRNKSS 282
Y+RC+V S +YN+ CC + S+
Sbjct: 562 YYRCNVRDSSIYNVLLCCTNHVSN 585
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 580 LWTWTHQLKFQQTKLLY*EVMNLKYLFVHGNPSTDLLASGSGDSTARIW 726
+W T +F +L ++K + H P+ DLL SGS D++ W
Sbjct: 404 IWEATEDDEFDCLAVLQEHTQDVKVVTWH--PTEDLLVSGSYDNSICFW 450
>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 316 IFNNAAGGTRAPLMLLCDMCDSIPKEYAEW 227
I NN G P+ + CD P+E AE+
Sbjct: 147 IVNNVVGDVVYPIFITCDPARDPPQEMAEY 176
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 187 TFLC-TATYKSQVSTIQHILLELNHTY 264
+FLC T +Y++ + H+LL+LN Y
Sbjct: 195 SFLCKTVSYENAIEFTGHVLLDLNDHY 221
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 691 ASGSGDSTARIWDMSD 738
ASGSGD ++WD S+
Sbjct: 81 ASGSGDGAVKLWDASE 96
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 691 ASGSGDSTARIWDMSDNP 744
AS D+T RIW DNP
Sbjct: 487 ASAGDDNTVRIWSNKDNP 504
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 682 DLLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKDVTS 828
+LL SGS DST IWD + P ++ H G V N ++S
Sbjct: 274 NLLVSGSSDSTIIIWDWQNR---RPLKVYFGHTDNVLGVVVSENYIISS 319
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 670 NP-STDLLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKD-VTSLDWNC 843
NP ++L ASG GD IWD+ TT Q+ C ++ +KD + ++DW+
Sbjct: 70 NPVHSNLCASGGGDDLGYIWDI-----TTGEQI----C------QLTGHKDSIVAIDWSF 114
Query: 844 DGNLL 858
DG +
Sbjct: 115 DGTYI 119
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 670 NPSTD-LLASGSGDSTARIWDMSDNP 744
NP D LLA+ S D T +WD+ NP
Sbjct: 290 NPFNDYLLATASADKTVALWDLR-NP 314
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 682 DLLASGSGDSTARIWDMS 735
++LASGS D+T R+W+++
Sbjct: 284 NILASGSYDATIRLWNLA 301
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 685 LLASGSGDSTARIWDMSDN 741
L+ SGS DST +IW + N
Sbjct: 406 LVLSGSDDSTIKIWSLETN 424
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 589 WTHQLKFQQTKLLY*EVMNLKYLFVHGNPSTDLLASGSGDSTARIW 726
W +Q K ++L N+ + F H ++ SGS D T +IW
Sbjct: 213 WDYQTK-ACVRILEGHTNNVSFAFFHSK--FPIIISGSEDGTVKIW 255
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 670 NPSTDLLASGSGDSTARIWDMSDN 741
+P L ASG D T +WD++++
Sbjct: 201 SPDGSLCASGGRDGTLMLWDLNES 224
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 661 VHGNPSTDLLASGSGDSTARIWDMSDNPTTT----PNQLVLRHCIQKGGTEVPS-NKDVT 825
V NP ++LA+ + T +W ++ P TT +L L K S ++
Sbjct: 73 VRFNPEGNILATAGDEGTIMLWVPTNTPITTLADDAEELALAKEYWKVKIVCRSMGSEIY 132
Query: 826 SLDWNCDGNLL 858
L W+ D N L
Sbjct: 133 DLCWSVDSNFL 143
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 661 VHGNPSTDLLASGSGDSTARIWDMSDNPTTT 753
V+ + LLA+ SGD T++++D+S T
Sbjct: 186 VNFSKDDSLLATSSGDQTSKVFDLSTQQCIT 216
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 72 KYILPKLT*SSYYRLLLIICYCCDYHLICKMSFTSDEVNFLVYRYL 209
KY+ ++ Y + ICY C L+ + VN+L +Y+
Sbjct: 573 KYVYSQVLNKLIYFFTIAICYACINPLVLLFASVLFCVNYLTQKYI 618
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 673 PSTDLLASGSGDSTARIWDMSD-----NPTTTPNQLVLRHCI 783
P ++L ASGS D R+W +++ P T L + CI
Sbjct: 421 PYSNLFASGSWDGNIRLWKIAEGLRSFEPLTIATPLSVYGCI 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,635,978
Number of Sequences: 5004
Number of extensions: 74598
Number of successful extensions: 317
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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