Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F24
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 211 7e-55
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 208 4e-54
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 115 6e-26
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 113 1e-25
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 52 5e-07
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 29 5.2
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 5.2
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 28 9.2
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 9.2
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 211 bits (515), Expect = 7e-55
Identities = 104/179 (58%), Positives = 128/179 (71%), Gaps = 5/179 (2%)
Frame = +2
Query: 203 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 367
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 368 EVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 547
EV +Y GAYK+++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 548 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVLMP 724
AIDHIINSAAK+ YMSAG + VPIVFRGPNGAA+GV AQHSQC+ AWY+ PGLKVL+P
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVP 187
Score = 48.0 bits (109), Expect = 1e-05
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +3
Query: 693 AXVQALKF*CLYSAXDAKGLLKAXIRDPXPVVMLEXEIXXG 815
A V LK YSA DA+GLLKA IRDP PVV LE E+ G
Sbjct: 177 AHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYG 217
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 208 bits (509), Expect = 4e-54
Identities = 97/155 (62%), Positives = 117/155 (75%)
Frame = +2
Query: 260 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 439
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 440 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 619
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 620 VFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVLMP 724
VFRGPNGAA+GV AQHSQC+ AWY+ PGLKVL P
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTP 167
Score = 48.0 bits (109), Expect = 1e-05
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +3
Query: 693 AXVQALKF*CLYSAXDAKGLLKAXIRDPXPVVMLEXEIXXG 815
A V LK YSA DA+GLLKA IRDP PVV LE E+ G
Sbjct: 157 AHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYG 197
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 115 bits (276), Expect = 6e-26
Identities = 58/164 (35%), Positives = 87/164 (53%)
Frame = +2
Query: 227 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTR 406
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 407 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 586
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 587 YMSAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVL 718
Y S G +PIV RGP G + A+HSQ +++ PGL+++
Sbjct: 172 YTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMV 215
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 113 bits (273), Expect = 1e-25
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 245 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 412
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 413 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 592
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 593 SAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVL 718
S G +PIV RGP G + A+HSQ +++ PGL+++
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMV 198
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 52.4 bits (120), Expect = 5e-07
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Frame = +2
Query: 278 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 457
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 458 EXXXXXXXXXXXXXXLKPICEFMTFNFSMQAID---------------------HIINSA 574
E + I E ++ A D I+N A
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 575 AKTFYMSAGTVPV-PIVFRGPNGAASGVAAQHSQCFGAWYSXCPGLK 712
AK Y S + R P GA HSQ A++ PGLK
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLK 211
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 729 SAXDAKGLLKAXIRDPXPVVMLE 797
S +AKGLL A IRDP PVV E
Sbjct: 257 SPREAKGLLLASIRDPNPVVFFE 279
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 304 CFKSSDRRGDGERRESLRFGRGSRSIRWCLQ 396
C K +RG G+R ESL + R + W +Q
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSWLMQ 40
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 602 TVPVPIVFRGPNGAASGVAAQHSQCFGAWYSXCP 703
+V P++F G + A V FGAWYS P
Sbjct: 23 SVLTPLLFAGGDPRAQEVTTSSISRFGAWYSGSP 56
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 569 SAAKTFYMSAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVLMPLFSKXC 742
+ A+ + + T + I G NG VAA+H FG S C + PL+S C
Sbjct: 54 AVAEVYKLGEHTRVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYSGLC 111
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 197 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 349
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,430,381
Number of Sequences: 37544
Number of extensions: 456046
Number of successful extensions: 1216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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