Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F24
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...   239   2e-63
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    66   3e-11
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score =  239 bits (585), Expect = 2e-63
 Identities = 109/155 (70%), Positives = 129/155 (83%)
 Frame = +2

Query: 260 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 439
           A +   A+  +TVRDALNQA+DEE++RD++VF++GEEVAQYDGAYK+++GLWKK+GDKRV
Sbjct: 15  AGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRV 74

Query: 440 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 619
           +DTPITE              L+PICEFMTFNFSMQAID IINSAAKT+YMSAG VPVPI
Sbjct: 75  VDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPI 134

Query: 620 VFRGPNGAASGVAAQHSQCFGAWYSXCPGLKVLMP 724
           VFRGPNGAA+GVAAQHSQ F AWY+ CPGLKV+ P
Sbjct: 135 VFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCP 169



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 26/41 (63%), Positives = 26/41 (63%)
 Frame = +3

Query: 693 AXVQALKF*CLYSAXDAKGLLKAXIRDPXPVVMLEXEIXXG 815
           A    LK  C YSA DAKGLLKA IRD  PVV LE EI  G
Sbjct: 159 AHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYG 199


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +2

Query: 275 LASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPI 454
           L    + +  ++N+A+   ME D+   + GE+VA + G ++ +  L KK+G  RV +TP+
Sbjct: 40  LEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVA-FGGVFRCSLDLQKKFGKDRVFNTPL 98

Query: 455 TEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPV-PIVFRG 631
            E                 I E    ++   A D ++N AAK  Y S        +  R 
Sbjct: 99  CEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAAKFRYRSGNQFDCGKLTVRT 158

Query: 632 PNGAASGVAAQHSQCFGAWYSXCPGLKVLMP 724
             GA    A  HSQ   A ++  PGLK+++P
Sbjct: 159 TWGAVGHGALYHSQSPEANFTHTPGLKLVVP 189



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 741 AKGLLKAXIRDPXPVVMLEXEI 806
           AKGLL + IRDP P +  E +I
Sbjct: 195 AKGLLLSCIRDPNPCIFFEPKI 216


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 206 KSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKV 352
           K S +++  L  L  R+ ATS    ++P T  D L++   EEM+R E +
Sbjct: 22  KRSSSLIASL--LGSRNGATSSKTINEPTTTEDELDEESMEEMKRRELI 68


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
           protein K09H11.3 protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -2

Query: 555 SIACIEKLKVMNSQIGLSPAKAAPTAIPANPASVMGVSITLLSPYFFHRPLVTL*APSY* 376
           S+     L    S+  LS +KA  + +   P+ V   S +L+SP   H  +    APS  
Sbjct: 718 SVTRTPSLSRRRSRAHLSYSKATESPLD-KPSEVRRESSSLMSPLLKHVTMTNNSAPSQV 776

Query: 375 ATSSPK 358
            TSSP+
Sbjct: 777 ITSSPR 782


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,912
Number of Sequences: 27780
Number of extensions: 375437
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)