Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F23
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    92   1e-19
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    84   3e-17
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    29   0.95 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   5.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   5.0  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 6/199 (3%)
 Frame = +3

Query: 219 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 398
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 399 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 575
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 576 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 740
           G     R KL+E S+ +   H   A        S ED   + HFI FV    + D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 741 LDGRKAFXVNHGPTSQETL 797
           LDGR+   V H     + L
Sbjct: 176 LDGRQEGPVQHSEIESDLL 194


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 7/218 (3%)
 Frame = +3

Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 402 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 581
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115

Query: 582 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 746
               +G+ L  SE I   H   A+       +    + ED V +HFI++   +   YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174

Query: 747 GRKAFXVNHGPTSQETLLEDAAKF--ARIMAREPNEVR 854
           G +A  +NHG  ++E   E A     ARI   +P E+R
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIR 212


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 615 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFXVNHGPTSQET 794
           S  ++    ELA +  TNT      V   ++++V  +   + L   K F   H P+S E 
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183

Query: 795 LL 800
           L+
Sbjct: 184 LI 185


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 678  AEDPVNHHFISFVQKDGALYELDGR 752
            AE+ V  HF+    KD  LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 627 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 719
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,586
Number of Sequences: 5004
Number of extensions: 74314
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)