Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F23
(940 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 151 1e-36
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 105 7e-23
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 85 1e-16
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 67 2e-11
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 62 6e-10
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 30 3.1
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 7.1
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 29 7.1
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 28 9.3
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 151 bits (365), Expect = 1e-36
Identities = 76/200 (38%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Frame = +3
Query: 219 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 398
PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 7 PLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESVA 65
Query: 399 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 575
+ + + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F +
Sbjct: 66 SPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTA 123
Query: 576 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 755
+D R LE+ E + AH G T A+D V H++ F D ++ELDG
Sbjct: 124 DMDPAQRASFLEEDEEMEKAHSVAVSAGDT---EAKDGVIEHYVCFSCVDDEIFELDGGN 180
Query: 756 AFXVNHGPTSQETLLEDAAK 815
+ ++HGP+S ++LL+DAAK
Sbjct: 181 SQPISHGPSSPDSLLQDAAK 200
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 105 bits (251), Expect = 7e-23
Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 2/142 (1%)
Frame = +3
Query: 432 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 608
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 609 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFXVNHGPTSQ 788
E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ + HGP+S
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308
Query: 789 ETLLEDAAKFARI-MAREPNEV 851
+TLL+DAAK + +A P+ +
Sbjct: 309 DTLLQDAAKVIKARIASNPDSM 330
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 249 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 374
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 84.6 bits (200), Expect = 1e-16
Identities = 67/206 (32%), Positives = 94/206 (45%), Gaps = 21/206 (10%)
Frame = +3
Query: 249 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 371
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 372 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDG 545
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK- 255
Query: 546 HMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKD 725
R LEK + + AH A G T D V H+I FV+ D
Sbjct: 256 ----------------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECD 296
Query: 726 GALYELDGRKAFXVNHGPTSQETLLE 803
G LYELDG K +NHGP+S ++LL+
Sbjct: 297 GTLYELDGMKPGPINHGPSSSKSLLQ 322
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 67.3 bits (157), Expect = 2e-11
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +3
Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 402 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 581
+E I ++ N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDL 166
Query: 582 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRK 755
+G + SE I A A+ + S +D +HFIS+V DG LYELDG K
Sbjct: 167 PPDLKGLAIVNSESIRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLK 226
Query: 756 AFXVNHG 776
++ G
Sbjct: 227 EGPISLG 233
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 62.1 bits (144), Expect = 6e-10
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 5/193 (2%)
Frame = +3
Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 402 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 581
E + ++ + N+F+ Q I NAC T A++ + N E+ G L E G
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGA 112
Query: 582 DAT-ARGKLLEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELD 746
A +G + S+ I AH A+ + +D +HFIS++ +G LYELD
Sbjct: 113 FAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELD 172
Query: 747 GRKAFXVNHGPTS 785
G K ++ G S
Sbjct: 173 GLKEGPISLGQCS 185
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 666 NTPSAEDPVNHHFISFVQKDGALYELDGRKAFXVNHGPTSQE 791
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 363 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 518
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 322 SVSGSSPMTSTIFHLFGTPSFCKNLFRTSG 233
S S+P +S++F TP+ NLF TSG
Sbjct: 230 STPASAPSSSSLFSTPTTPTLSSNLFGTSG 259
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +3
Query: 624 IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGA------LYELDGRKAFXVNHGPTS 785
I+ +KE+ + + N P+ + + ++V+K G+ L E + P S
Sbjct: 1546 IVKVNKEIVKMQRVNAPAGQMQLKGLIEAYVEKTGSEKGATILREWEAYLPLFWQLVPPS 1605
Query: 786 QETLLEDAAKFARIMAREPNEVR 854
+E E A+F R++A++ V+
Sbjct: 1606 EEDSPEACAEFERVLAKQATTVQ 1628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,258,928
Number of Sequences: 37544
Number of extensions: 440155
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -