Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F23
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 142 4e-34
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 138 4e-33
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 133 2e-31
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 63 3e-10
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.68
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.68
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.68
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.90
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 4.8
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 4.8
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 4.8
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 6.3
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 6.3
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 28 8.4
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 28 8.4
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 28 8.4
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 28 8.4
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 28 8.4
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 28 8.4
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 28 8.4
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 28 8.4
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 8.4
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 8.4
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 142 bits (343), Expect = 4e-34
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 2/199 (1%)
Frame = +3
Query: 219 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 398
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 399 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 572
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 573 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 752
K + R L + + H A +GQT PS + V HHFI FV K+G LYE+D R
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSR 173
Query: 753 KAFXVNHGPTSQETLLEDA 809
+ F GPTS TL++DA
Sbjct: 174 RPFAREIGPTSDATLVKDA 192
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 138 bits (335), Expect = 4e-33
Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 2/199 (1%)
Frame = +3
Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 402 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 575
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
Query: 576 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 755
++ R LL + AH+E A+EG+T D V++HFI++V K+G LYE+D
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCA 185
Query: 756 AFXVNHGPTSQETLLEDAA 812
F G T+ T+++DA+
Sbjct: 186 PFPRPLGATTDSTMIKDAS 204
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 133 bits (322), Expect = 2e-31
Identities = 77/198 (38%), Positives = 112/198 (56%), Gaps = 2/198 (1%)
Frame = +3
Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 402 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 575
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
Query: 576 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 755
+ R LL + AHKE A+EG+T P + V +HFI++V K+G L+E+D
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCS 184
Query: 756 AFXVNHGPTSQETLLEDA 809
F G T+ T++ DA
Sbjct: 185 PFPRPLGATTDSTMIRDA 202
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 62.9 bits (146), Expect = 3e-10
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Frame = +3
Query: 222 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 401
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 402 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 581
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 582 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDG 749
D RG L SE I H +++ + + E N+HF+++V +YELDG
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDG 174
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 534 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 680
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 534 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 680
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 534 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 680
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 507 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 686
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 687 PVNHHFISFVQK 722
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 375 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 542
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 543 --GHMQKFLNEA-KGLDATARGKLLEK 614
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 375 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 542
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 543 --GHMQKFLNEA-KGLDATARGKLLEK 614
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +3
Query: 375 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 542
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 543 --GHMQKFLNEA-KGLDATARGKLLEK 614
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 722 FLDKADKMMVDGIFST--WCICLAF 654
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 722 FLDKADKMMVDGIFST--WCICLAF 654
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 297 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 473
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 474 NACGTIALVHSVANNTDIIELSDGH 548
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 261
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 283
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 384 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 434
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 666 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FXVNHGPTSQETLLEDA 809
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 257 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 305
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 666 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FXVNHGPTSQETLLEDA 809
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 270 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 318
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 666 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FXVNHGPTSQETLLEDA 809
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 269 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 317
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 666 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FXVNHGPTSQETLLEDA 809
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 272 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 320
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 211 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 261
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 233 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 283
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +1
Query: 634 LTRNWLKKAKQIHQVLKIPSTIILSALSRKMEHCMS*MAVKLXLSIMXQLH 786
L + W +K +++ + KIPS + +L + +E C++ + + + S + LH
Sbjct: 387 LMQEWPQKLEEVLKTTKIPSAELDVSLEKYVEICLNIVDIPVGKSRIEALH 437
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 297 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 473
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 474 NACGTIALVHSVANNTDIIELSDGH 548
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 297 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 473
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 474 NACGTIALVHSVANNTDIIELSDGH 548
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,983,808
Number of Sequences: 27780
Number of extensions: 409561
Number of successful extensions: 1052
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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