Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F22
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...    27   5.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -3

Query: 482 PXSELIPLAXAX-RPSAXXXCPEXAXERPXRKPPLPARWXDSLMQKKP-PTPPXA 324
           P SEL P   A  RPS     P  A   P + PP+P+          P  +PP A
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 763  PXPQPSXGXKNIXPPVPYXKXGVGXXXQXGCCQXXXRXPXPPPXXXPXXPXPLXPPPP 936
            P P+PS       PPVP    G+    +          P PPP   P  P P    PP
Sbjct: 1160 PVPKPSVAA----PPVPAPSSGIPPVPKPAA----GVPPVPPPSEAPPVPKPSVGVPP 1209



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/61 (27%), Positives = 20/61 (32%)
 Frame = +1

Query: 754  SXXPXPQPSXGXKNIXPPVPYXKXGVGXXXQXGCCQXXXRXPXPPPXXXPXXPXPLXPPP 933
            S  P P+ S G  +  PPVP     +               P P P   P  P P    P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS-----GAPPVPAPSGIPPVPKPSVAAP 1102

Query: 934  P 936
            P
Sbjct: 1103 P 1103



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
 Frame = +1

Query: 763  PXPQPSXGXKNIXPPVPYXKXGVGXXXQXGCCQXXXRX-----PXPPPXXXPXXPXPLXP 927
            P P PS G     PPVP    GV             +      P PPP   P  P P   
Sbjct: 1170 PVPAPSSGI----PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225

Query: 928  PPP 936
             PP
Sbjct: 1226 LPP 1228


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 705 PSCALLVPTPAPXRIPVRXSXP 770
           P  A++VPTPAP  IPV    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAP 756



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 877 PXPPPXXXPXXPXPLXPPPP 936
           P PPP      P P  PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 320 QVXGEXWEVFSALMNXANARGEAVCXLG 403
           +V G+ W+ +  L+   N  GEA+  LG
Sbjct: 12  KVIGDKWDTYLTLLQEDNTEGEALDKLG 39


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 2/107 (1%)
 Frame = +3

Query: 615 TSITXNXXXXXXWXKPAXTIKIPXVXPWKAPSCALLVPTPA--PXRIPVRXSXPSAKXGX 788
           TS++ +      W KPA +       PW+ P+     P  +  P  +P     P  +   
Sbjct: 414 TSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLP-----PWQQPTQ 468

Query: 789 QKHXXPCXVSQXGGRSXXPXXVLPTXVXXXSPPXXXXXPXXXXPXAP 929
           Q    P  +         P    P      +PP     P    P  P
Sbjct: 469 QSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMP 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,833
Number of Sequences: 5004
Number of extensions: 25395
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)