Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F22
         (943 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.6  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.8  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   6.4  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    28   8.4  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 935 GGGGXRGXGXXGXXXGGGXG 876
           GGGG RG G  G   GGG G
Sbjct: 99  GGGGGRGGGGGGRGGGGGGG 118



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 935 GGGGXRGXGXXGXXXGGGXGXR 870
           GGGG  G G  G   GGG G R
Sbjct: 90  GGGGRGGGGGGGGGRGGGGGGR 111



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 935 GGGGXRGXGXXGXXXGGGXGXR 870
           GGGG  G G  G   GGG G R
Sbjct: 107 GGGGRGGGGGGGGGRGGGGGGR 128


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 850 GCCQXXXRXPXPPPXXXPXXPXPLXPPPP 936
           GCC      P PPP      P PL  PPP
Sbjct: 21  GCCSMGP-PPCPPPPPPMCAPPPLPCPPP 48


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 871 RXPXPPPXXXPXXPXPLXPPPP 936
           R P  PP   P  P P  PPPP
Sbjct: 482 RPPPSPPALPPALPNPNEPPPP 503


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = +1

Query: 745 GYRSXXPX-PQPSXGXKNIXPPVPYXKXGVGXXXQXGCCQXXXRXPXPPPXXXPXXP-XP 918
           GY+   P  P P      + PP+P                     P PPP   P  P  P
Sbjct: 255 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314

Query: 919 LXPPPP 936
             PPPP
Sbjct: 315 GMPPPP 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = +1

Query: 745 GYRSXXPX-PQPSXGXKNIXPPVPYXKXGVGXXXQXGCCQXXXRXPXPPPXXXPXXP-XP 918
           GY+   P  P P      + PP+P                     P PPP   P  P  P
Sbjct: 265 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324

Query: 919 LXPPPP 936
             PPPP
Sbjct: 325 GMPPPP 330


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
 Frame = +1

Query: 763 PXPQPSXGXKN-IXPPVPYXKXGVGXXXQXGCCQXXXRXPXPPPXXXPXXPXPLXPPPP 936
           P P P         PP PY +  V               P PPP   P  P    PPPP
Sbjct: 99  PAPYPQHAVPAPAPPPAPYPQHAVPAPAPY----QQQPPPPPPPPHYPPPPPHYPPPPP 153


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 877 PXPPPXXXPXXPXPLXPPP 933
           P PPP   P  P P  PPP
Sbjct: 139 PPPPPPRVPRTPPPRSPPP 157


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 935 GGGGXRGXGXXGXXXGGGXGXR 870
           GGGG  G G  G   GGG G R
Sbjct: 161 GGGGRGGGGGRGGGGGGGAGER 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,042
Number of Sequences: 27780
Number of extensions: 197549
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)