Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F21
(923 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 248 5e-66
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 243 2e-64
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 243 2e-64
11_06_0087 - 19919224-19922304 29 3.9
04_03_1015 - 21734381-21736534 29 3.9
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 6.9
04_01_0252 - 3329712-3331061 28 9.1
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.1
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 9.1
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 248 bits (607), Expect = 5e-66
Identities = 118/219 (53%), Positives = 146/219 (66%)
Frame = +2
Query: 80 WREALRSI*SA*TLPKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNE 259
W L+ P H L P P ++ LRNRLKYALT E
Sbjct: 17 WARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Query: 260 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 439
V+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK
Sbjct: 77 VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 136
Query: 440 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 619
+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 137 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 196
Query: 620 CMITGGRNLGRVGTIVXRERHPGSFDIVHIKDSTXSHNF 736
M+TGGRN GRVG I RE+H GSF+ +H++D+ H F
Sbjct: 197 VMVTGGRNTGRVGVIKSREKHKGSFETIHVEDA-LGHQF 234
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 243 bits (594), Expect = 2e-64
Identities = 112/205 (54%), Positives = 143/205 (69%)
Frame = +2
Query: 122 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 301
PKH L P P ++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 302 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 481
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 482 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 661
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 662 IVXRERHPGSFDIVHIKDSTXSHNF 736
I RE+H GSF+ +H++D+ H F
Sbjct: 195 IKNREKHKGSFETIHVEDA-LGHQF 218
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 79 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 243 bits (594), Expect = 2e-64
Identities = 111/199 (55%), Positives = 141/199 (70%)
Frame = +2
Query: 122 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 301
PKH L P P ++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 302 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 481
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 482 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 661
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 662 IVXRERHPGSFDIVHIKDS 718
I RE+H GSF+ +H++D+
Sbjct: 195 IKNREKHKGSFETIHVEDA 213
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 79 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 474 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 587
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 438 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 563
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 195 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 82
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 187 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKSRKKRXNL 38
C D+ V TH+ V P S W+R AS G W S +R ++
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDRYEASRPE-GHTITWNEFSSVFRRSHV 160
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 188 LWGPVDGLGAYTPPSLSNIHALGAFKR 108
L G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 374 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 478
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,538,457
Number of Sequences: 37544
Number of extensions: 483138
Number of successful extensions: 1452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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