Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F21
         (923 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   301   6e-82
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   301   6e-82
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   301   6e-82
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   296   3e-80
AE014297-2439|AAF55493.3|  430|Drosophila melanogaster CG14316-P...    29   6.8  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  301 bits (740), Expect = 6e-82
 Identities = 138/179 (77%), Positives = 154/179 (86%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 361
           P     + P LIFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK
Sbjct: 35  PHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94

Query: 362 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 541
           T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95  TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154

Query: 542 KVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSFDIVHIKDS 718
             NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V RERHPGSFDIVHIKDS
Sbjct: 155 HANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213



 Score = 93.9 bits (223), Expect = 3e-19
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 79  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 219
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL  F
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIF 47


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  301 bits (740), Expect = 6e-82
 Identities = 138/179 (77%), Positives = 154/179 (86%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 361
           P     + P LIFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK
Sbjct: 35  PHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94

Query: 362 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 541
           T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95  TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154

Query: 542 KVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSFDIVHIKDS 718
             NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V RERHPGSFDIVHIKDS
Sbjct: 155 HANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213



 Score = 93.9 bits (223), Expect = 3e-19
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 79  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 219
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL  F
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIF 47


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  301 bits (740), Expect = 6e-82
 Identities = 138/179 (77%), Positives = 154/179 (86%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 361
           P     + P LIFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK
Sbjct: 35  PHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94

Query: 362 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 541
           T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95  TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154

Query: 542 KVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSFDIVHIKDS 718
             NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V RERHPGSFDIVHIKDS
Sbjct: 155 HANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213



 Score = 93.9 bits (223), Expect = 3e-19
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 79  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 219
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL  F
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIF 47


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  296 bits (726), Expect = 3e-80
 Identities = 136/179 (75%), Positives = 152/179 (84%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 361
           P     + P L FLRNRLKYAL G EV KIV QRL+KV GKVRTDPTYPAG+MDV+++EK
Sbjct: 35  PHKLRESLPLLTFLRNRLKYALNGAEVTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEK 94

Query: 362 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 541
           T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95  TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154

Query: 542 KVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSFDIVHIKDS 718
             NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V RERHPGSFDIVHIKDS
Sbjct: 155 HANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213



 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +1

Query: 79  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 219
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL  F
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTF 47


>AE014297-2439|AAF55493.3|  430|Drosophila melanogaster CG14316-PA
           protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTG-NEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 358
           PTSC S C +L  L   L   L G NE+LK+     +K+  ++R +        +VV   
Sbjct: 209 PTSCISHCKYLSNLFVNLDTFLAGQNEILKLPSLTELKIT-EIRENKDTTKALANVVQ-T 266

Query: 359 KTNEL 373
           K NEL
Sbjct: 267 KGNEL 271


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,497,026
Number of Sequences: 53049
Number of extensions: 806257
Number of successful extensions: 1993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)