Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F21
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   234   8e-62
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   4.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   4.7  
Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z50796-2|CAA90669.2|  261|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   8.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  234 bits (572), Expect = 8e-62
 Identities = 112/187 (59%), Positives = 136/187 (72%)
 Frame = +2

Query: 176 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 355
           P P     + P  +FLRNRLKYAL   E  KI+ QR+++VDGKVRT   +P GFMDVV+I
Sbjct: 32  PGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAI 91

Query: 356 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 535
           E+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP
Sbjct: 92  ERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151

Query: 536 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSFDIVHIKD 715
            +KVND+I  +I+T KI D +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKD
Sbjct: 152 HVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKD 211

Query: 716 STXSHNF 736
           S   H+F
Sbjct: 212 SA-GHSF 217



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 35/45 (77%), Positives = 38/45 (84%)
 Frame = +1

Query: 85  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 219
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL+ F
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLF 46


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 398 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 529
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 616 LVYDHGRP*LGACGHHRVPRETSRLLRH 699
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 616 LVYDHGRP*LGACGHHRVPRETSRLLRH 699
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical
           protein E01G4.5 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +1

Query: 76  NMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADFPEESSEVCFDRK 255
           N A  P K  + +N  + ++L+   GV   R   GP     CLP A       ++ FD+K
Sbjct: 115 NRASLPPKGTRDVNRMRQFILEHTFGVKNER-ICGPS---HCLPKA---LAVGKLLFDKK 167

Query: 256 RSPENCETTPHKG*WES 306
           R P++ E    +  W+S
Sbjct: 168 RCPDSVERAALENKWQS 184


>Z50796-2|CAA90669.2|  261|Caenorhabditis elegans Hypothetical
           protein T05A6.5 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 182 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 322
           P+ CAS C  L+F  N     L+ NE++K+    + K++G ++ + T
Sbjct: 34  PSDCASVCAVLVFNSNT---DLSENELVKLF-SNMSKINGDIKIENT 76


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 555  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 391
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,507
Number of Sequences: 27780
Number of extensions: 391754
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)