Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F19
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 52 8e-08
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 52 1e-07
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 48 2e-06
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 47 4e-06
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 42 9e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 36 0.008
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 36 0.010
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 33 0.071
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.16
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 30 0.38
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.66
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 29 1.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 27 2.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.5
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 26 6.1
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.1
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 8.1
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 8.1
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 52.4 bits (120), Expect = 8e-08
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 355 LSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSC 489
L D +GEC IC+E D + +LPC +H+ CI W VN +C
Sbjct: 389 LIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTC 433
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 373 ECVICLEELSAGDTIARLP-CLCIYHKGCIDQWFEVNRS-CPEH 498
EC+IC EE +AGD +AR+ CLCI+H C W + CP H
Sbjct: 229 ECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCPVH 272
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 337 SYNEDVLSDSKGECVICLEELSAGDTIARL-PCLCIYHKGCIDQWFEV-NRSCP 492
+Y +D S C+ICLE + GD +L C +H+ CIDQW N SCP
Sbjct: 753 AYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCP 806
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 46.8 bits (106), Expect = 4e-06
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 373 ECVICLEELSAGDTIARLPCLCIYHKGCIDQWF-EVNRSCP 492
ECVICLE + GD + LPC +H+ CI +W + +CP
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACP 360
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 42.3 bits (95), Expect = 9e-05
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 352 VLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWF-EVNRSCP 492
+L D + C+IC + + D + LPC ++H CID W + SCP
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCP 244
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 358 SDSKGECVICLEELSAGDTIARLP-CLCIYHKGCIDQWFEVNR-SCP 492
S + C++CL D RL C +H+ CIDQW ++ SCP
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCP 565
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 35.9 bits (79), Expect = 0.008
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 376 CVICLEELSAGDT--IARLPCLCIYHKGCIDQWFEVNRSCP 492
C IC ++++ D ++PC I+ K C+ +W E + +CP
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCP 147
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 373 ECVICLEELSAGDTIAR-LPCLCIYHKGCIDQWFEVNRS-CP 492
EC ICL E S + R LPC I+H CID + N CP
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCP 538
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 32.7 bits (71), Expect = 0.071
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 406 GDTIARLPCLCIYHKGCIDQWFEVNRSCP 492
G IA++PC +H C++ W V +CP
Sbjct: 48 GLRIAKIPCGHYFHNHCLESWCRVANTCP 76
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 31.5 bits (68), Expect = 0.16
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 427 PCLCIYHKGCIDQWFEVNRSCP 492
PC +YH+ C+ QW E CP
Sbjct: 646 PCHHLYHRQCLLQWMETRSICP 667
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 412 TIARLPCLCIYHKGCIDQWFEVNRSCP 492
T RLPC I H C+ W E ++CP
Sbjct: 322 TPKRLPCGHILHFHCLRNWLERQQTCP 348
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 373 ECVICLEELSAGDTIARLPC-LC--IYHKGCIDQWFEVNRS--CP 492
EC IC LS T+ C C +H C+ +WF+ + S CP
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCP 1601
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 238 RKEIGIKCPVCSKFVLPDDIECHLVMCLTRP 330
++E + CP CS V + I HL CL P
Sbjct: 152 KREDLVHCPACSNLVPHNQINQHLDSCLNSP 182
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 304 HLVMCLTRPRLSYNEDVLS 360
H + LT PR S+NED+LS
Sbjct: 727 HPIQTLTAPRQSFNEDLLS 745
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 253 IKCPVCSKFVLPDDIECHL 309
++CPVC+K V +DI HL
Sbjct: 7 VQCPVCAKTVTMNDINPHL 25
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 340 YNEDVL-SDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 492
Y VL ++S C+IC + + G C +Y C++ W + + SCP
Sbjct: 1079 YEHIVLKAESHQICIICRDIIKQGFITT---CGHLYCSFCLEAWLKHSSSCP 1127
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 376 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 498
C++ LE + L +YHK C+D ++ S EH
Sbjct: 2498 CILLLENSLQNNPGLSEDELTVYHKSCLDALSDIYYSLDEH 2538
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 558 TMPSGVTVCLSALDGALVAGVLRTRPVHFEPLIY 457
T+P +T+C + L+ VLR RPV+ L Y
Sbjct: 305 TIPRELTLCYTHLNQETRGLVLRQRPVNLHHLYY 338
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 375 MCNMPRGAVRGRHYRPSAVPLHLS*RVHRSMVRSEQVVSG 494
+CN P G + H+ + +PLH + + +QV G
Sbjct: 581 VCNSPSGLKKVEHFFKNILPLHFGLEKDKFSIFLDQVFRG 620
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 373 ECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 492
EC IC E L T C Y C+ W + ++SCP
Sbjct: 84 ECPICTEALQRPFTTH---CGHTYCYECLLNWLKESKSCP 120
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 121 HTSKTKLFMRSFHTFTPRGGRTPTQNLKEF 32
H K K F+R+ H+ T + P Q KE+
Sbjct: 212 HPDKIKAFLRAIHSATLDMLKDPVQTYKEY 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,014
Number of Sequences: 5004
Number of extensions: 52739
Number of successful extensions: 163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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