Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F17
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    45   1e-05
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   1.5  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 318 LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKXNRARTXVFKSL 494
           +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +  +    V K+L
Sbjct: 73  IVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKAL 132

Query: 495 K 497
           K
Sbjct: 133 K 133



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = +2

Query: 155 GPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLK 292
           G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +K
Sbjct: 19  GEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMK 64


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 425 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 327
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 234 PLPGPSTSARVWSITSTTLTNFPFNGPSAXQGDTXLVLRTV 112
           P+PG +T     ++ S T  N+P+ G  +    + L   T+
Sbjct: 51  PVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTI 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,350
Number of Sequences: 5004
Number of extensions: 42356
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)