Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F17
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    50   2e-06
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    48   1e-05
03_05_0161 + 21400580-21401695                                         30   2.7  
08_02_1591 - 28076320-28076931                                         29   6.2  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +3

Query: 327 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKXNRARTXVFKSLKVKA 506
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K   A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 507 A 509
           A
Sbjct: 133 A 133



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 167 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPYSSCEESVDRC* 346
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++        ++  ++++   
Sbjct: 22  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 79

Query: 347 TQ*KMDRKSMGPE-VSEQREARTND 418
            + K +  S G + + ++R A  ND
Sbjct: 80  VKNKWENSSWGKKLIVQKRRASLND 104


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +3

Query: 327 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 458
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 167 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPYSSCEESVDRC* 346
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++        ++  ++++   
Sbjct: 35  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 92

Query: 347 TQ*KMDRKSMGPE-VSEQREARTND 418
            + K +  S G + + ++R A  ND
Sbjct: 93  VKNKWENSSWGKKLIVQKRRASLND 117


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 267 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 172
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>08_02_1591 - 28076320-28076931
          Length = 203

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 244 ATDPLKPTPSHKIPPQIRVHSPLLVL*GKRGQML 345
           AT+  KP P+  +PPQ+  ++P  +  G  G +L
Sbjct: 51  ATEEKKPAPAGFVPPQLDPNTPSPIFGGSTGGLL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,472
Number of Sequences: 37544
Number of extensions: 288107
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)