Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F17
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    50   3e-06
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    33   0.34 
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    31   0.79 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    31   0.79 
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/52 (40%), Positives = 37/52 (71%)
 Frame = +3

Query: 312 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKXNR 467
           T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+   NR
Sbjct: 70  TKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNR 121



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +2

Query: 149 ADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLK 292
           A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF LK
Sbjct: 16  ASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLK 63


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 366 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKXNRARTXVFKSLKVKAAR 512
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 342 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKXNRARTXVFKSLKVKAARAGT 521
           A   EK  +   AQK A  EK+A+ T   + K TA +VK  ++   + K    K A++  
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185

Query: 522 FGKKNFP 542
             KK+ P
Sbjct: 186 -AKKSAP 191


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 342 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKXNRARTXVFKSLKVKAARAGT 521
           A   EK  +   AQK A  EK+A+ T   + K TA +VK  ++   + K    K A++  
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185

Query: 522 FGKKNFP 542
             KK+ P
Sbjct: 186 -AKKSAP 191


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 191 RLPRSLTFPLMDRRLXRATRPWFYVPCKRHDV-----LTTSLTQTMYSQKKKSKILRIPY 27
           RLP S TFP    RL RA  P    P  R  +      ++++ +TM S  KK+ ++ +  
Sbjct: 364 RLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKKTPVMGVSS 423

Query: 26  SVI 18
           + +
Sbjct: 424 TAV 426


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 191 RLPRSLTFPLMDRRLXRATRPWFYVPCKRHDV-----LTTSLTQTMYSQKKKSKILRIPY 27
           RLP S TFP    RL RA  P    P  R  +      ++++ +TM S  KK+ ++ +  
Sbjct: 364 RLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKKTPVMGVSS 423

Query: 26  SVI 18
           + +
Sbjct: 424 TAV 426


>AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical
           protein Y95D11A.3 protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 192 LLTKLVHWLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLTRLVRKAWTDA--KLNEKWT 365
           ++TK +H  +DP    +   S     I       T+   L +   +A T     +N  + 
Sbjct: 162 VVTKRIHESIDPTSNSINEESEILQKIQMEIEILTKENDLLKKDYEAVTKRVDSVNMVFN 221

Query: 366 ESQWAQKLANKEKRAQMTDYDRFK 437
           E++  QK+A +EKR    D  R K
Sbjct: 222 EAKARQKMAMEEKRQLQRDLTRAK 245


>Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical
           protein F32D8.3 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 69  HCLC*XRCKNVMPFARYVEPG-XCRPG 146
           HC C   C N  P+    EPG  CR G
Sbjct: 71  HCACESTCNNPDPYCSKCEPGCTCRNG 97


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 351 NEKWTESQWAQKLANKEKRAQMTDYDRFK 437
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,061
Number of Sequences: 27780
Number of extensions: 246498
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)