Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F16
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    88   2e-18
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    63   6e-11
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    43   7e-05
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   6.2  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   8.2  

>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
 Frame = +3

Query: 231 IAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMC 410
           IAKP+A              +S  K+ +R G+K V K +R GEKG+V  AGDISP++++ 
Sbjct: 28  IAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVIS 86

Query: 411 HLPAVCEEKDVQYCYTPSRKDIGAAMGTMR--GCIMVL-------VKEHEDYKDLYEEVK 563
           H+P +CE+ +V Y YT S++ +G A  T R   C+M++       + + E+YK+ YEE+ 
Sbjct: 87  HIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEII 146

Query: 564 SEIKLL 581
            E+  L
Sbjct: 147 KEVPAL 152


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 33/95 (34%), Positives = 50/95 (52%)
 Frame = +3

Query: 294 SNHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKD 473
           ++H   +R G     K L  G    +  A D  PIEI+ HLP +CE+K+V Y + PS+  
Sbjct: 26  ASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85

Query: 474 IGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKL 578
           +G A G  R  I   +  +E   DL  ++++ IKL
Sbjct: 86  LGRACGVSRPVISASITTNE-ASDLLPQIQA-IKL 118


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 19/87 (21%), Positives = 42/87 (48%)
 Frame = +3

Query: 312 IRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMG 491
           ++ GL  V   +   +  +V  A D+ PIE++  LPA+C++  V Y    ++  +G  + 
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIH 191

Query: 492 TMRGCIMVLVKEHEDYKDLYEEVKSEI 572
                ++ + +  E+ K+    + S +
Sbjct: 192 QKTAAVLAVTEVREEDKNELASIVSAV 218


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 390 SPIEIMCHLPAVCEEKDVQYCYTPSRKD---IGAAMGTMRGCIMVLVKE 527
           SPI++  HL    E   V Y +   RKD   I  +  T++G +M+ +K+
Sbjct: 7   SPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRLKD 55


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 250 VAIGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPI 125
           V + FA I      +  LCG +  ++S     +   CF LP+
Sbjct: 133 VFLVFAYITNILVMAMLLCGGSATISSVTGMNTVAVCFLLPV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,987
Number of Sequences: 5004
Number of extensions: 66384
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)