Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F16
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 102 4e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 58 8e-09
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 46 4e-05
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 46 4e-05
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 33 0.27
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 29 5.9
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 28 7.8
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 28 7.8
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 28 7.8
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 28 7.8
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 28 7.8
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 102 bits (244), Expect = 4e-22
Identities = 48/131 (36%), Positives = 75/131 (57%)
Frame = +3
Query: 189 EPQSHDEKVEHCSIIAKPMAXXXXXXXXXXXXXXSSNHKNYIRNGLKIVQKQLRLGEKGM 368
E + E + IA+P+A +S +R G+K VQK+LR EKG+
Sbjct: 28 EKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGI 87
Query: 369 VFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDL 548
AG++SPI++ H+P +CEEK++ Y Y PSR+ +G A+G R I++ VK D+K+L
Sbjct: 88 CILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKEL 147
Query: 549 YEEVKSEIKLL 581
Y+EV ++ L
Sbjct: 148 YDEVAEALRHL 158
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 58.0 bits (134), Expect = 8e-09
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 297 NHKNYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDI 476
N+K ++ G K L G ++ A D P+EI+ HLP +CE+K+V Y + S+ +
Sbjct: 31 NYKQ-LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAAL 89
Query: 477 GAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 581
G A G R I + ++E K +++K +++ L
Sbjct: 90 GRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 306 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 485
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 135 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Query: 486 MGTMRGCIMVLVKEHEDYK 542
+ + LV + + K
Sbjct: 195 VRRKTTAAVALVDVNPEDK 213
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 306 NYIRNGLKIVQKQLRLGEKGMVFFAGDISPIEIMCHLPAVCEEKDVQYCYTPSRKDIGAA 485
N +R+G+ + + + +V A D++P+EI+ HLPA+C + +V Y + +G
Sbjct: 115 NTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Query: 486 MGTMRGCIMVLVKEHEDYK 542
+ + LV + + K
Sbjct: 175 VRRKTTAAVALVDVNPEDK 193
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 33.1 bits (72), Expect = 0.27
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = -3
Query: 386 VSSKENHALFTQT*LLLNDFQA---VSDIVLMVTRFLNKFIYLFGEFFCGHRFRY---YT 225
+ S+ +A++ Q + N+ A +S+++ M + LN + + E R YT
Sbjct: 38 ILSRVTNAIYLQAGAIKNEINARELISELLHMPSNQLNTVVNVNVEVASSELRRMHQEYT 97
Query: 224 TMFDFFIVALRFSFNADISLVFLFDRFLLYFTHNFRFL 111
+ FF + SFN D++ +F F+LYF+ L
Sbjct: 98 KLIHFFENRTQSSFNDDVNAIFNNIIFILYFSRKSSLL 135
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 244 IGFAIILQCSTFSSWLCGSALMLTSAWSSCSTGSCFTLPII 122
I F +L STF+SWL S+ S+ SS S+ C T I
Sbjct: 265 IHFQSLLNTSTFTSWLQSSSFSSASS-SSTSSEQCCTFIFI 304
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 102 SYK*KSEIMGKVKQEPVEQEDQADVSIKAEPQSHDEKVEH 221
S+K K+E + K++ VE D D + AE ++++E V+H
Sbjct: 157 SFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKH 196
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 102 SYK*KSEIMGKVKQEPVEQEDQADVSIKAEPQSHDEKVEH 221
S+K K+E + K++ VE D D + AE ++++E V+H
Sbjct: 1002 SFKQKAERAEEQKKKLVEDLDSLDDKLAAEKRANNEHVKH 1041
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 117 SEIMGK-VKQEPVEQEDQADVSIKAEPQSHDEK 212
SE + K VKQEP+E E+ + +K E DE+
Sbjct: 796 SETLDKDVKQEPIETEEFEKIYVKREAVEEDEE 828
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 117 SEIMGK-VKQEPVEQEDQADVSIKAEPQSHDEK 212
SE + K VKQEP+E E+ + +K E DE+
Sbjct: 796 SETLDKDVKQEPIETEEFEKIYVKREAVEEDEE 828
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 278 FIYLFGEFFCGHRFRYYTTMFDFFIV 201
F ++FGEFF H+ R + + F +V
Sbjct: 37 FFWIFGEFFLEHKARVFWRLVQFVLV 62
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 331 SFRSSYVWVKRAWFSLLETFHP 396
+FR VW +WFS +TF P
Sbjct: 244 TFRRCEVWFNSSWFSTAQTFDP 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,810
Number of Sequences: 27780
Number of extensions: 373139
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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