Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F15
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       87   2e-17
01_06_0963 + 33441731-33442096,33442175-33442270                       61   1e-09
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    46   3e-05
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    46   6e-05
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    36   0.034
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099...    31   0.98 
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    31   1.7  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    29   6.9  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
 Frame = +3

Query: 156 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 335
           DA+ K FV+ YY  FD    R  LV++Y  + S +TFEG Q  GA  I  KL SL F + 
Sbjct: 4   DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 336 TRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 506
              +  VD QP    GG+L+ V G L+   D  P  + Q F L P G +FYVQ+D+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
 Frame = +3

Query: 156 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 335
           D + + FV+ YY  FD    RA L  +Y  +TS ++FEG  + GA +I  KL  L F++ 
Sbjct: 26  DVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFEQC 82

Query: 336 TRIVTAVDSQ--PMFDGGVLINVLGRLKCDEDPPHLYMQTF 452
              V  VD Q  P F GG+L+ V G L+   +   L    F
Sbjct: 83  RHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
 Frame = +3

Query: 162 IGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQLQGAVKIMEKLNS-LTFQ 329
           +G  FV QYY +     Q  +LV+ +  + S +             V  ME +N+ +   
Sbjct: 23  VGNAFVHQYYNILH---QSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSM 79

Query: 330 KITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 503
            I R  + AVD+Q    GGV + V G L   +D    + Q+F L P    ++V +DI R
Sbjct: 80  DIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
 Frame = +3

Query: 162 IGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG---AVKIMEKLNS-LTFQ 329
           +G  FVQQYY +     Q  +LV  +  + S +        G   +V  ME +N  +   
Sbjct: 15  VGNAFVQQYYQILH---QSPDLVYRFYQDASRLGRPPADRYGDMVSVTTMEAINEKIMAM 71

Query: 330 KITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 503
            ++R  +  VDSQ    GGV + V G L   +     + Q+F L P    ++V +D+FR
Sbjct: 72  DMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
 Frame = +3

Query: 162 IGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLN----SLTF 326
           IG  FVQQYY  L   P Q   +   Y+  ++    +      +V  +  +N    S  F
Sbjct: 17  IGNAFVQQYYNVLHSSPGQ---VCKFYHDSSTLGRPDSNGTMTSVTTLTAINDEFLSTDF 73

Query: 327 QKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 503
                 +  VD+Q   +GGV I V G +  +    H + Q+F L P     ++V +D+ R
Sbjct: 74  SSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133


>08_02_0085 +
           12108474-12108552,12108656-12108759,12109726-12109925,
           12110003-12110103,12110184-12110379,12110584-12110745,
           12110856-12110937,12111741-12112004,12113047-12113174,
           12113795-12113957
          Length = 492

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -1

Query: 277 CTPSKVMNEVSTLYILTRFAR*AGSSNNV*YCCTKPLPIASYLRIERHLD*DVSICHTNK 98
           CT  K++  VST Y+       AG    +     KP  +   LR  RHLD    +    +
Sbjct: 150 CTKLKMLLHVSTAYV-------AGEQEGL--ILEKPFLMGQALREGRHLDITSELNLIKE 200

Query: 97  KPNSSQKNSRCDELTKKXNLKD 32
                + ++RC E T+K  +K+
Sbjct: 201 TRREMKASNRCSEKTEKRTMKE 222


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
 Frame = +3

Query: 162 IGKGFVQQYY-TLFDDPAQRANLVNMYNVETSFMTFEGVQ--LQGAVKIMEKLNSLTFQK 332
           I   FVQQYY  L + P Q        ++        GV   +     I + + S+ F  
Sbjct: 17  ISGAFVQQYYHILHETPDQVYKFYQDASI-VGRPDSNGVMKYVSTTADINKIILSMDFSN 75

Query: 333 ITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQHDIFR 503
               +   D+Q     GVLI V G L   E     + Q+F L P     Y V +DIFR
Sbjct: 76  YLTEIETADAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLNDIFR 132


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 525 KLCHGCLNGKCRAEHKMNLRVASTRRFA-CTDVEDLRHTS 409
           +LCHGC  G  R E +  +R+AS R  A C D  + R  S
Sbjct: 102 ELCHGCAVGLMRDEDE-GVRLASVRLIALCADKLNTREGS 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,374,987
Number of Sequences: 37544
Number of extensions: 399069
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)