Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_F15
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...   118   8e-27
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    36   0.054
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    33   0.22 
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    33   0.22 

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score =  118 bits (283), Expect = 8e-27
 Identities = 55/126 (43%), Positives = 86/126 (68%), Gaps = 4/126 (3%)
 Frame = +3

Query: 153 YDAIGKGFVQQYYTLFD--DPAQRAN-LVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLT 323
           Y+++ K F+Q YY+ FD  D   RA  L ++Y+ E S+MTFEG Q +G   I++K  +L 
Sbjct: 7   YESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKFTTLG 66

Query: 324 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIF 500
           F KI R +T +DSQP++DG + + VLG+LK DEDP + + Q F+L+P    S+++ ++IF
Sbjct: 67  FTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIF 126

Query: 501 RLGIHD 518
           RL +H+
Sbjct: 127 RLDLHN 132


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
 Frame = +3

Query: 168 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEK----LNSLTFQKI 335
           K F+  YY + D   ++   +     + S   + G  + G +K +      + SL  Q++
Sbjct: 21  KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGFMKALPSTQHDIQSLDAQRL 77

Query: 336 TRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 503
              VT   S     GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 78  PEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
 Frame = +3

Query: 168 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIV 347
           K F+  YY + D   ++   +     + S   + G  + G   I E + +L   +    +
Sbjct: 21  KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQ--HDI 75

Query: 348 TAVDSQPM-------FDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 503
            ++D+Q +         GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 76  QSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
 Frame = +3

Query: 168 KGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIV 347
           K F+  YY + D   ++   +     + S   + G  + G   I E + +L   +    +
Sbjct: 21  KKFMDVYYDVMDRKREK---IGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQ--HDI 75

Query: 348 TAVDSQPM-------FDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 503
            ++D+Q +         GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 76  QSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,693
Number of Sequences: 27780
Number of extensions: 392446
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)