Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F13
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.29
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.29
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 30 0.39
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 29 0.68
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 29 0.68
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.6
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 2.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.7
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 2.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 3.6
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 27 3.6
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 27 4.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 27 4.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 4.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 6.3
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 6.3
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.3
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 26 6.3
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 667 IEFDNCSKLXTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 530
+EF CS L +S ILS + E KL G+STSA + K A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.7 bits (66), Expect = 0.29
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Frame = +3
Query: 87 WKFRIFKIKNI*MSL---HLEEANETQQLMQNEGEDDEQKIPQSATSPVTS----NKISS 245
WK R + N + LEE + + ++ E ++ E K+ ++A T N ++
Sbjct: 1335 WKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNE 1394
Query: 246 EAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQR-DFMRSNYTNRPKNIPKETPDVK 422
E +L + + +T + + K + + L R ++ TN+ K + + + +
Sbjct: 1395 EVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENE 1454
Query: 423 NMEKALLELLDDFHTGKLSAFGSG--CSMEQMINIRDQQE 536
M+K + L D H + SA + EQ ++ ++E
Sbjct: 1455 AMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSEKE 1494
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 138 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 317
E+ E ++ +QN+ QK S+ + SNK++ + +N EK + ++ + E
Sbjct: 42 EDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKEE 101
Query: 318 T 320
+
Sbjct: 102 S 102
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 29.5 bits (63), Expect = 0.68
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 495 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVXSLEQLSNSI 668
C++ +M + ++++++ R + ++D+P E ++ DK E SLE++S S+
Sbjct: 3 CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.68
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 171 NEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRL 350
NE + PQ T+ +S ISS + + G +LN + S+ ++
Sbjct: 261 NEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVS--SFNSDSHS 318
Query: 351 QRDFMRSNYTNRPKNIPKETPDVKN 425
+D++ +YTN P + KE+ D N
Sbjct: 319 PKDYISQSYTNEP-GLKKESADSFN 342
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 138 EEANETQQLMQNEGEDDEQKIPQSATSPV------TSNKISSEAASLTSKNHEKVLTSTG 299
E+ N ++ + EG +++ +S+T+ TS ++ +A TS H+K TS+
Sbjct: 76 EKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSANSSAERTSSQHQKPETSSQ 135
Query: 300 NSLNESTKVSYVNERRLQRD 359
+ + V VNE+ ++
Sbjct: 136 IGKDNAAPVENVNEKSTSQE 155
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 138 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 317
+ +E+ ++ NE + +IP+ T T+ E + + +L+ + ++ NES
Sbjct: 1285 QNLDESACVLTNESSLSQTEIPEEKTENETTAVNGFENSK--KRQFSSLLSGSIDTNNES 1342
Query: 318 TKVSYVN-ERRLQRDFMRSNYTNRPKNIPKETPDVKNME-KALLELL 452
KVS V ++ +D ++S T I K D+K+ E + L +LL
Sbjct: 1343 NKVSSVEFDKSGPQDIIQS-MTEATFEIEKNIQDLKSEEVQKLSDLL 1388
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 830 QLPIILYCLAYKLINSALFYV 892
QLP+IL C Y +N +FY+
Sbjct: 768 QLPLILVCDRYDFVNDLVFYL 788
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 294 TGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKNIPKET 410
TGN N S V ++ +RDF +N NRPK + ++T
Sbjct: 630 TGNIYSNNSPGVKALSSDNFKRDFGDTNAINRPKFVGQQT 669
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 423 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFE 602
N+E+ + + S+ +GC E + ++ + +++A+ H ++ + E+ F
Sbjct: 56 NIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115
Query: 603 NSAS--RDKMEQLVXSLEQL 656
A+ +DK + +V +E++
Sbjct: 116 RYAASLKDKKKMIVSGIEKV 135
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 135 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNH-EKVLTSTGNSLN 311
++E T+ ++ +DDE A SN +S E+ +H + V+ S GNS+
Sbjct: 344 VDEGTSTEANDESSEDDDEDNNTDEANEDAQSN-VSDESPKGEGSSHSDNVVLSDGNSVK 402
Query: 312 E 314
+
Sbjct: 403 K 403
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 291 STGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKN 395
+TGNS NE K S + + D+M SNYT N
Sbjct: 79 ATGNSTYNELVKTSMLYQSGEDSDYMPSNYTTSEGN 114
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 4.8
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%)
Frame = +3
Query: 93 FRIFKIKNI*MSLHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKN 272
F I + K S + AN +L+ EG + +P S+ T+ E +
Sbjct: 23 FTIIRDKTKPRSEFIFYANRIIRLIVEEGLNH---LPVSSAKVTTAQNAEYEGVMFDGRI 79
Query: 273 HEKVLTSTGNSLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELL 452
+ G S+ + + + R + R T++P + P+ ++ K + LL
Sbjct: 80 CGVSIMRAGESMEQGLRECCRSVRIGKILIQRDEETHKPVLHYIKLPE--DISKRYVLLL 137
Query: 453 DDFHTGKLSAFGSG-CSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFEN 605
D L+ GS C+ME +IN+ +QE + L+ + K D F N
Sbjct: 138 DPM----LATGGSAICAMEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPN 185
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 135 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISS 245
LEE N + + + EDD+++ S+TS V + S+
Sbjct: 340 LEEKNASTKTENDSNEDDKEECQSSSTSSVPESTAST 376
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/110 (20%), Positives = 41/110 (37%)
Frame = +3
Query: 138 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 317
E+ NE ++ ++ ++ K + +S T + T G++ +S
Sbjct: 99 EKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKS 158
Query: 318 TKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHT 467
+ +R + +T R KN PK +P + E A E HT
Sbjct: 159 SHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHT 208
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 225 TSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVN 338
++NKIS +L+SK K TG + S YVN
Sbjct: 510 STNKISENPTTLSSKVENKNEPKTGENKEPSQTNEYVN 547
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 357 LFEDVFHLRTTPSWIRLDCYQYW-*VLFHDFLMLNLRLRL 241
++ VFH+R TP +LD + VLF + L L LRL
Sbjct: 153 VWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRL 192
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/89 (21%), Positives = 39/89 (43%)
Frame = +3
Query: 132 HLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLN 311
H +E ++L G D+ +K ++ + N+ + A S+ K+ + T +
Sbjct: 588 HFHSVSEIKKLPM--GTDELEKSMVRPSTAMYINRQNENAVSI-DKSRDLQGTVNTKEIR 644
Query: 312 ESTKVSYVNERRLQRDFMRSNYTNRPKNI 398
+ +SY N+R L D Y ++ N+
Sbjct: 645 SRSALSYQNDRPLATDLPSVIYNHKHPNV 673
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +3
Query: 135 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNE 314
++E N+ +D++K + S + AA SK + V S +
Sbjct: 146 VKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEET 205
Query: 315 STKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVK 422
STK S ++D + + T + TPD+K
Sbjct: 206 STKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIK 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,339
Number of Sequences: 5004
Number of extensions: 72021
Number of successful extensions: 264
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -