Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F08
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 161 1e-40
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 29 0.92
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 28 1.6
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 3.7
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 4.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 4.9
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 8.6
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 161 bits (391), Expect = 1e-40
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Frame = +2
Query: 152 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 325
MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+T+ + +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 326 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 505
VL+TLT D G+ +S +H + G+ GI+IA LALKHR+ K + RIV FVGSP+
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 506 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDT 643
DEK L++LAKR+KK V D++ GE +N L F++ N D+
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS 165
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 29.1 bits (62), Expect = 0.92
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Frame = +2
Query: 491 SPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLGV 670
SP + E +K A + K N D + G SENN T + + GGS G
Sbjct: 86 SPFDASIVESLKKAGGIILGKTNMDEFAMGVKSENNLFGRTVNPVVKDSNYDVGGSSGGA 145
Query: 671 CA--GRRLCCAF*GFDNKSSDR 730
A +C A G D S R
Sbjct: 146 AAAIAADICYASVGSDTGGSIR 167
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 212 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 376
F P+RL + V L S + + EN++ + L N +L + + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 554 VNCDVVSFGEDSENNPLLTTFVNTLNG 634
VN ++VS ED++ L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 488 GSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 631
GS ++ DE + +++ N D+++F +N PLLT +++L+
Sbjct: 4 GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 272 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 385
T + P+N+ V +L E++ATLT + + ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 704 LRKHNTASGRHR--HQG-DFPQSMYLSHLVC*QRWSKEGCFLNPLQT 573
LR +T S R R H G D P S Y LV +RW +E C +P +T
Sbjct: 743 LRLFHTVSSRLRTHHLGTDVPLSRYC-RLV--RRWDEESCSFDPNET 786
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 497 VNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLG 667
VN DE E L ++K+N FG+D + T NTL G++ G+H G
Sbjct: 353 VNPDELE------ELLEKKLNSFCDDFGDDERSGFDNTDHDNTLVGEEEMVPGNHGG 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,662
Number of Sequences: 5004
Number of extensions: 68668
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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