Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F07
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 31 1.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 31 1.7
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 30 2.9
06_03_1310 + 29238644-29240260 30 2.9
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.9
09_02_0603 - 11150739-11150746,11150791-11151340 28 9.0
08_01_0059 - 394001-394708 28 9.0
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 346 PPFXKXXPPPXXGXXPPXKKXXPPXLKXXFFXPPP 450
PP K PPP PP + PP PPP
Sbjct: 1130 PPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPP 1164
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +3
Query: 723 KKXPPP--PXKXAXXXXXPPXSPXKKKXXPXXGGGGXVXSPXKGGXXXSXKXGAPPKKIF 896
+K PPP P K P P +K P +P K S G PP +
Sbjct: 778 EKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVK 837
Query: 897 XXPPXP 914
P P
Sbjct: 838 SSSPPP 843
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 346 PPFXKXXPPPXXGXXPPXKKXXPPXLKXXFFXPPP 450
PP K PPP PP PP PPP
Sbjct: 1162 PPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1196
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 346 PPFXKXXPPPXXGXXPPXKKXXPPXLKXXFFXPPP 450
PP K PPP PP PP PPP
Sbjct: 1194 PPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1228
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Frame = +3
Query: 348 PXXXKXPPPXXGXFXPXXKXXPPXFKKXFFXPPPXGGKXVXXXXXXXG---XPPXGGGXG 518
P PPP G + P PP + + PPP G G PP G
Sbjct: 418 PYMGAPPPPPPGSYAPVPWGQPPPYAS--YPPPPPGSSMYNPPPPAPGQATPPPYGVQYA 475
Query: 519 PP 524
PP
Sbjct: 476 PP 477
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 735 PPPXKXAXXXXXPPXSPXKKKXXPXXGGGGXVXSP 839
PPP A PP P + P GGGG +P
Sbjct: 67 PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGGFGAP 101
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Frame = +3
Query: 732 PPPPXKXAXXXXXP----PXSPXKKKXXPXXGGGGXVXSPXKGGXXXSXKXGAPPKKIFX 899
PPPP P P SP P GGGG + P G S P
Sbjct: 459 PPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLP 518
Query: 900 XPP 908
PP
Sbjct: 519 FPP 521
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +3
Query: 723 KKXPPPPXKXAXXXXXPPXSPXKKKXXPXXG-GGGXVXSPXKGG 851
K PPPP PP P P G GG P KGG
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +3
Query: 393 PXXKXXPPXFKKXFFXPPPXGGKXVXXXXXXXGXPPXGGGXGPPXXKKXXXXGXPPP 563
P PP PPP K G PP GPP PPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +3
Query: 732 PPPPXKXAXXXXXPPXSPXKKKXXPXXGGGGXVXSPXKGGXXXSXKXGAPPKKIFXXPPX 911
PPPP PP P K P G P KG PPK PP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKG-----PPPPPPPKGPSPPPPP 368
Query: 912 P 914
P
Sbjct: 369 P 369
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/76 (28%), Positives = 22/76 (28%)
Frame = +3
Query: 345 PPXXXKXPPPXXGXFXPXXKXXPPXFKKXFFXPPPXGGKXVXXXXXXXGXPPXGGGXGPP 524
PP PPP G P PP PPP G PP G GPP
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPPP------PPPPKGPSPPPPP------PPGGKKGGPP 378
Query: 525 XXKKXXXXGXPPPXKG 572
PP G
Sbjct: 379 PPPPKGGASRPPAAPG 394
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +1
Query: 346 PPFXKXXPPPXXG-XXPPXKKXXPPXLKXXFFXPPPXGXXGFXXXXXXXGXPLXGGXXXP 522
PP PPP G PP K PP PPP G P GG P
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPG-GKKGGPPPPPPKGGASRP 389
Query: 523 P 525
P
Sbjct: 390 P 390
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +3
Query: 345 PPXXXKXPPPXXGXFXPXXK--XXPPXFKKXFFXPPPXGGKXVXXXXXXXGXPP 500
PP PPP F P + PP FF PPP V G PP
Sbjct: 39 PPFGFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQ--SRVPPPPPQLGVPP 90
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 346 PPFXKXXPPPXXGXXPPXKKXXPPXLKXXFFXPPP 450
PP + PPP PP ++ PP PPP
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,113
Number of Sequences: 37544
Number of extensions: 425178
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -