Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F05
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 122 1e-28
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 50 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 3e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 5e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 5e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.004
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 37 0.004
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.008
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.033
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 33 0.044
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.044
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.10
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.10
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.13
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.24
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.31
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.31
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.41
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.95
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 1.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.7
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.8
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 6.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 8.8
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 8.8
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 122 bits (293), Expect = 1e-28
Identities = 53/82 (64%), Positives = 69/82 (84%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
EVN IL+I+NL +KI+AEEMYD+FG+YG +RQIR+GNT +TRGTAFVVYE++ DA+ AC+
Sbjct: 9 EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACE 68
Query: 351 HLSGFNVCNRYLVVLYYRSNKA 416
LSG+N +RYLVV YY +A
Sbjct: 69 KLSGYNFMDRYLVVHYYNPERA 90
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 50.0 bits (114), Expect = 5e-07
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDI----FGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 353
LYIRN+ KI + I FG YG + ++ T RG AFVV++++ +A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 354 LSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKK 470
L G+ + + +++ Y +S I + EEI+T KK
Sbjct: 88 LQGYPLYGKPMMIQYSKSKSDI--IVQRESPEEIETRKK 124
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.6 bits (108), Expect = 3e-06
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +3
Query: 108 KFIHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN-- 281
K H + A + R P+ +IL I+NLP++ + +++ + G YG +R +RV
Sbjct: 698 KLSHQGVDAAAEVRKQDSSKPKGTKIL-IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKF 756
Query: 282 TPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDT 461
RG AF + +A NA L ++ R+L VL Y SN +D Q I+
Sbjct: 757 DRSARGFAFAEFVTAREAANAMRALKNTHLLGRHL-VLQYASNAT-----MDDMQHAIEK 810
Query: 462 LKKK 473
+ K+
Sbjct: 811 MAKE 814
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 141 QRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFV 311
++ N++L E R L++RNL Y + +++ +FG +G + Q+ + T +G A++
Sbjct: 311 EQERNIQLISETKR-LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYI 369
Query: 312 VYEDIFDAKNACDHLSGFNVCNRYLVVL 395
+ D DA A L R L VL
Sbjct: 370 DFHDADDAVRAYLELDAKPFQGRLLHVL 397
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
+ +L ++N PY SAEE+ +F +G + +I + P A + + + D + A L
Sbjct: 505 DNVLLVKNFPYGTSAEELTSLFSPFGELGRILI---PPAGTIAIIEFLNAPDCRQAFSKL 561
Query: 357 S 359
+
Sbjct: 562 A 562
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDH 353
++Y+ N+PY+++ E++ DIF + G ++ ++ PE+ +G F Y D A +A +
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 354 LSGFNVCNRYLVV 392
L+ ++ R L V
Sbjct: 66 LNNYDAGTRRLRV 78
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNAC 347
N L++RNL ++ +++ + F G I+ V PET RG FV + + DA+ A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 348 DHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKK 470
L + R L + + K + +D D+ + T+++
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSE-VDTDQNKAVKKTIRQ 103
Score = 29.1 bits (62), Expect = 0.95
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 356
+++RNL ++ + +E+Y+ F ++G + ++ P T G F+ + D +N +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 357 S 359
S
Sbjct: 339 S 339
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAF--VVYEDIFDAKNACDHLS 359
+Y+ NLP+ S + D+F G++ + R+ P R F V +E+ DA ++ + L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 360 GFNVCNRYLVVLY 398
G+ R L + Y
Sbjct: 342 GYRYGGRPLQLSY 354
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 201 LPYKISAEEMYDIFGKYGAI--RQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVC 374
LPY + +++ D+F + G++ I++ +RG VV + +A +A L +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 375 NRYLVV 392
R L V
Sbjct: 250 GRTLEV 255
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.9 bits (89), Expect = 5e-04
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 359
+YI+NL +I+ +E D+FG++G I + + + RG FV Y + A+ A D L+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 360 GFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKY 476
Y+ K + G KK E + L+K+Y
Sbjct: 323 DKE----------YKGKKLYVG-RAQKKHEREEELRKRY 350
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR---GTAFVVYEDIFDAKNACDHL 356
LY+ L ++ ++++F G + IRV TR G A+V + ++ D + A D L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 357 S 359
+
Sbjct: 142 N 142
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 129 ALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR--GT 302
A L R A+ +P +R L + N+ + ++ E++ IF +G I + + + R G
Sbjct: 326 AAELARAASAEIP--FHR-LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGF 382
Query: 303 AFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ Y + A+NA + ++GF++ R + V
Sbjct: 383 GYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVY 317
R +++ L ++++ E+YD F + G +R +R + ++G A+V +
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNT-PETRGTAFVVYEDIFDAKNACDHL 356
R LY+ N+ +K++ +++ F YG + +R+ + +G +VV DA+NA
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALS-A 815
Query: 357 SGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKY 476
+G + NR L V+ + ++ + + TL K +
Sbjct: 816 AGKQLGNRVLNVVLSKPRESLEKTRVSSNDNR--TLAKSF 853
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGA---IRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
+YI NL + ++ +++ +F ++G I +R T +++G AF+ YED A D++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 357 SGFNVCNRYLVVLYYRSNK 413
+ + +R + V + S K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 37.1 bits (82), Expect = 0.004
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 186 LYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 353
LY+ NL KI+ ++ Y +F YG + I TP+ RG A VV+ D A A
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 354 LSGFNVCNRYLVVLYYRS 407
L F + + + Y S
Sbjct: 66 LKNFIFFGKEMKIQYAHS 83
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.1 bits (82), Expect = 0.004
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 356
L + NL EE+ D+F ++G I+++ + ET +G AFV Y D A A D L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 357 SGFNVCNRYL 386
G+ N L
Sbjct: 264 DGYGWNNLIL 273
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.008
Identities = 13/52 (25%), Positives = 31/52 (59%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAK 338
++++ N+PY +S ++M +IF + G ++ ++ PET + + FD++
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.033
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACD 350
+ +++ L Y ++ F +YG I +IRV T ++ G AFVV+E D K A
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
Query: 351 HLSGFNVCNRYLVV 392
+G + R +VV
Sbjct: 160 ASAGLMLNGRRIVV 173
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.5 bits (73), Expect = 0.044
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 168 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR 296
P +N+ +YI+ LP ++ +E+ ++F K G I + TP +
Sbjct: 106 PVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIK 148
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 33.5 bits (73), Expect = 0.044
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
E L++ NLP +SA + F YG + IR+ + +AF+ ++ + AK+ +
Sbjct: 584 EPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRM---LSHKHSAFLNFDSVETAKHVLE 640
Query: 351 HLSG 362
L+G
Sbjct: 641 ELNG 644
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
L++ +P + + E+M D F YG I ++ N G FV ED DA++ + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 366 NVCNRYLVV 392
+VV
Sbjct: 61 EFMGSRIVV 69
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDA 335
+R ++I NLP +E+ + FGK+G I I++ + AFV + +I DA
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI---LSKKNIAFVHFLNIRDA 347
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
+R +Y ++ ++ EE+ I +YG I I+ + R + FV Y +I +A A + L
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKY---LKNRSSGFVAYTNISNAMKAVNGL 555
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 159 RLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIF 329
R P E R + + NL ++ E + +IFG YG I I + + +G ++ Y
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 330 DAKNACDHLSGFNVCNRYLVV 392
A NA D ++ + L V
Sbjct: 152 QAANAVDKMNNAELDGEELFV 172
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.24
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Frame = +3
Query: 105 NKFIHTKMALALQRRANVRLPPE-----VNRILYIRNLPYKISAEEMYDIFGKYGAIRQI 269
N T ++ + + PPE + + I+N+P+ + E ++ +F R
Sbjct: 202 NSASSTALSRGMSNSVTLTAPPEPDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPY 261
Query: 270 RVG---NTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDK 440
+ RG AF + +AK L+G+ + R L V + R + +++
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVER 321
Query: 441 -KQEEIDTLKKKYGISS 488
KQE+ ++K + S
Sbjct: 322 GKQEKRAVEERKNQLKS 338
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.31
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +3
Query: 126 MALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT- 302
+AL N R + +Y+ NLP + +++++F +G + + + + + T
Sbjct: 2 IALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD 61
Query: 303 -------AFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFK 422
AF+ +E+ A NA L+G + L V Y + +K
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTHIVERYK 108
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNT 284
++ I NLP K+S E+Y+ F +G I + + +
Sbjct: 271 VIGILNLPLKVSPVELYNEFSNHGHILGVAINQS 304
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 186 LYIRNLPYKI-----SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
L+++NL I EE++ FG+ + +T ++G FV + F+A A +
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 351 HLSGFNVCNRYLVVLY 398
L+G + L V Y
Sbjct: 481 TLNGVLFGKKRLFVNY 496
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
+LY+ NLP S+ ++ +F YG ++ I + +P+ +A V YE + A A D L
Sbjct: 1 MLYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPD--NSAIVSYESLSSAIVARDAL 55
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET--RGTAFVVYEDIFDAKNACDHLS 359
+++ NL ++ +Y+ F +G I + + + R AFV +++ DAK A ++++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 360 GFNVCNRYLVV 392
+C+R + V
Sbjct: 68 YSILCDRCIRV 78
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT---AFVVYEDIFDAKNACDH 353
+LY+ LP+ ++M F ++G + ++R+ +T + AF+ +E + A +
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 354 LSGFNVCNRYLVVLYYRSNKA----FKGIDIDKKQ 446
+ + + + L ++ FKG D+ K+
Sbjct: 166 MHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKR 200
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 438 KKQEEIDTLKKKYGISSEDLRK 503
KKQE++D+L+K EDLRK
Sbjct: 679 KKQEDVDSLEKNIQTLKEDLRK 700
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRGTAFVVYEDIFDAKNACDH 353
R LY+ + A E+ F +G + + I + T +R AFV YED DA++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYE 66
Query: 354 LSG 362
+ G
Sbjct: 67 VHG 69
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQI 269
+Y+ N+ ++S EE+ F KYG + I
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 306 FVVYEDIFDAKNACDHLSGFNVCNRYLVVL 395
FV+YE AK D + G RY+V+L
Sbjct: 427 FVLYEKTLGAKKDLDEIVGMVFYGRYIVLL 456
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPE--TRGTAFVVYEDIFDAKNACDHL 356
+YI NLP + +++ ++ +G + + + N + ++G F +++ DA+ A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 357 SG 362
G
Sbjct: 372 DG 373
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 301 VPLVSGVFPTLICLIAPYLPKISYISSADIL*GKFLMY 188
VP++S + L+ A YLP+ Y S + L G FL++
Sbjct: 382 VPMISKLRRVLMTF-ATYLPENGYCQSLNFLAGFFLLF 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,777
Number of Sequences: 5004
Number of extensions: 50344
Number of successful extensions: 172
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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