Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F05
(943 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 186 3e-47
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 50 2e-06
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 50 2e-06
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 50 2e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 42 8e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 42 8e-04
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.010
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.010
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.014
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 37 0.018
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 36 0.032
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.032
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.056
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.056
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.056
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 35 0.073
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 35 0.073
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 34 0.17
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 34 0.17
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 34 0.17
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.22
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 33 0.22
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 33 0.39
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 33 0.39
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 33 0.39
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 33 0.39
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 33 0.39
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 32 0.52
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 32 0.52
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 32 0.52
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 32 0.52
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.52
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 32 0.52
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 32 0.52
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 32 0.68
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.90
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.90
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.90
Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical p... 31 1.2
X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. 31 1.2
X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. 31 1.2
AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical ... 31 1.2
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical p... 30 2.1
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 2.1
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 30 2.8
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 30 2.8
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 30 2.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 3.6
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 3.6
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 6.4
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 6.4
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 186 bits (452), Expect = 3e-47
Identities = 81/122 (66%), Positives = 105/122 (86%)
Frame = +3
Query: 126 MALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTA 305
MA+A ++ +LPPEVNRILYI+NLPYKI+ EEMY+IFGK+GA+RQIRVGNT ETRGTA
Sbjct: 1 MAMANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTA 60
Query: 306 FVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGIS 485
FVVYEDIFDAK AC+HLSG+NV NRYLVVLYY++ KA+K +D +K + +++ +K++YGI
Sbjct: 61 FVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGIG 120
Query: 486 SE 491
+
Sbjct: 121 GD 122
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+Y+ LP +++E+ +IF ++G IR++ V P G AFV Y+D+ DA++A L G
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP--GFAFVEYDDVRDAEDAVRALDGS 62
Query: 366 NVC 374
+C
Sbjct: 63 RIC 65
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+Y+ LP +++E+ +IF ++G IR++ V P G AFV Y+D+ DA++A L G
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP--GFAFVEYDDVRDAEDAVRALDGS 62
Query: 366 NVC 374
+C
Sbjct: 63 RIC 65
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+Y+ LP +++E+ +IF ++G IR++ V P G AFV Y+D+ DA++A L G
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP--GFAFVEYDDVRDAEDAVRALDGS 62
Query: 366 NVC 374
+C
Sbjct: 63 RIC 65
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+Y+ NLP + +E+ DIF KYG I+ + + + AFV +ED DA++A G+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI-KSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 366 NVCNRYLVVLYYR 404
R + V + R
Sbjct: 70 EFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+Y+ NLP + +E+ DIF KYG I+ + + + AFV +ED DA++A G+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI-KSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 366 NVCNRYLVVLYYR 404
R + V + R
Sbjct: 70 EFDGRRIRVEFTR 82
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 192 IRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHLSG 362
+ NLP +++ +E+ D+FGK G + +I + T +G AFV +E DA A L+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 363 FNVCNRYLVVLYYR 404
+ + L V + R
Sbjct: 240 IRMYHMVLKVEWTR 253
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV----GNTPETRGTAFVVYEDIFDAKNACDH 353
L +RNLP++ S +E+ +F +GA++ IR+ G + RG FV + +A A D
Sbjct: 750 LLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDS 809
Query: 354 L 356
L
Sbjct: 810 L 810
Score = 35.1 bits (77), Expect = 0.073
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRG-TAFVVYEDIFD--AKNACDHL 356
L++RNLPY +++ +F KYG + +++V +T F + E +F A A L
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 357 SGFNVCNRYLVVL 395
G+ R + +L
Sbjct: 341 DGYVFKGRMMHIL 353
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNA 344
L ++NLP + +++ F KYG I + T E RG AFV + D A NA
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNA 59
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQI----RVGNTPETRGTAFVVYEDIFDAK 338
+V +++ NL ++ + +YD F +G I Q+ R ++ ++G AF+ + +
Sbjct: 97 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASD 156
Query: 339 NACDHLSGFNVCNRYLVVLY 398
A + ++G +CNR + V Y
Sbjct: 157 TALEAMNGQFLCNRAITVSY 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQI----RVGNTPETRGTAFVVYEDIFDAK 338
+V +++ NL ++ + +YD F +G I Q+ R ++ ++G AF+ + +
Sbjct: 107 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASD 166
Query: 339 NACDHLSGFNVCNRYLVVLY 398
A + ++G +CNR + V Y
Sbjct: 167 TALEAMNGQFLCNRAITVSY 186
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGA---IRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
+YI L Y +S ++ +F +YG I IR +T +++G AF+ Y+D A D+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 357 SGFNVCNRYLVVLYYRSNKAFK 422
+G ++ R + V + K K
Sbjct: 100 NGISLHKRMIRVDHVEEYKVPK 121
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 37.5 bits (83), Expect = 0.014
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 356
+Y+ N P++ + EE+ + F G I +R+ ET RG AF+ + + A+ A + +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 357 SGFNVCNRYLVV 392
+G R L V
Sbjct: 67 NGAEFNGRPLRV 78
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 37.1 bits (82), Expect = 0.018
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 153 NVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDI 326
N R + R L++ + Y+ S ++ F YG I+++ + + RG AF+ Y D
Sbjct: 95 NPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDK 154
Query: 327 FDAKNACDHLSGFNVCNRYLVVLYYR 404
+ A G V + LVV Y R
Sbjct: 155 AEMHTAYKKADGIKVDGKRLVVDYER 180
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 36.3 bits (80), Expect = 0.032
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVG-----NTPETRGTAFVVYEDIFDAKNACD 350
LY+ NL Y +++Y++FG+ G +R++ +G TP G FV Y DA+ A
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTP--CGFCFVEYYTREDAELALQ 96
Query: 351 HLSGFNVCNRYL 386
++S + +R +
Sbjct: 97 NISNTRMDDRVI 108
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 36.3 bits (80), Expect = 0.032
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNAC 347
+++ LPY S + +++ F ++G I + V NT ++RG FV +D A+ AC
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERAC 93
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 35.5 bits (78), Expect = 0.056
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +3
Query: 165 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 344
P N+IL+ NLP +AE + +F ++ ++ IR+ P G AFV ++ A A
Sbjct: 127 PAPPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRM--VPNRPGIAFVEFDTDSLAIPA 184
Query: 345 CDHLSGFNVCNRYLVVLYY 401
L+ F + + + + Y
Sbjct: 185 RTTLNNFKISAEHTMRVDY 203
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.056
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 168 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPETRGTAFVVYEDIFDAKNA 344
P+ + L++ N+P++ ++ +F K+G + + + N ++G FV E DA+ A
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERA 208
Query: 345 CDHLSGFNVCNRYLVV 392
L G + R + V
Sbjct: 209 RQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.056
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 168 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPETRGTAFVVYEDIFDAKNA 344
P+ + L++ N+P++ ++ +F K+G + + + N ++G FV E DA+ A
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERA 208
Query: 345 CDHLSGFNVCNRYLVV 392
L G + R + V
Sbjct: 209 RQELHGSMIEGRKIEV 224
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.1 bits (77), Expect = 0.073
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACD 350
N ++I+NL I + +YD F +G I +V E ++G FV +E A+ A +
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIE 203
Query: 351 HLSGFNVCNRYLVV 392
++G + ++ + V
Sbjct: 204 KVNGMLLSDKKVYV 217
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 153 NVRLPPEVN---RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPE-TRGTAFVV 314
N+ PP LYI +L +S +++ F G + IRV NT + G A+V
Sbjct: 45 NIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVN 104
Query: 315 YEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKA 416
++ DA+ A D ++ + R + +++ + + A
Sbjct: 105 FQQPADAERALDTMNFEVIHGRPMRIMWSQRDPA 138
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.1 bits (77), Expect = 0.073
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACD 350
N ++I+NL I + +YD F +G I +V E ++G FV +E A+ A +
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIE 203
Query: 351 HLSGFNVCNRYLVV 392
++G + ++ + V
Sbjct: 204 KVNGMLLSDKKVYV 217
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 153 NVRLPPEVN---RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPE-TRGTAFVV 314
N+ PP LYI +L +S +++ F G + IRV NT + G A+V
Sbjct: 45 NIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVN 104
Query: 315 YEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKA 416
++ DA+ A D ++ + R + +++ + + A
Sbjct: 105 FQQPADAERALDTMNFEVIHGRPMRIMWSQRDPA 138
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSG 362
LY+ +PY ++ YG I I + G AFV +ED DA++AC L G
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM-----KYGFAFVDFEDSRDAEDACHDLDG 57
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSG 362
LY+ +PY ++ YG I I + G AFV +ED DA++AC L G
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM-----KYGFAFVDFEDSRDAEDACHDLDG 57
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSG 362
LY+ +PY ++ YG I I + G AFV +ED DA++AC L G
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM-----KYGFAFVDFEDSRDAEDACHDLDG 57
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+YI LP + S ++ F YG + + + N G FV ++D DA +A L+G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN-----GFGFVDFQDQRDADDAVHDLNGK 58
Query: 366 NVCNRYLVVLYYR 404
+C +++ + R
Sbjct: 59 ELCGERVILEFPR 71
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+YI L ++S +++ F YG IR + + N G FV ++D DA++A L+G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 366 NVCNRYLVVLY 398
+ +++ Y
Sbjct: 60 ELGGERVILDY 70
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+YI L ++S +++ F YG IR + + N G FV ++D DA++A L+G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 366 NVCNRYLVVLY 398
+ +++ Y
Sbjct: 60 ELGGERVILDY 70
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
+YI L ++S +++ F YG IR + + N G FV ++D DA++A L+G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 366 NVCNRYLVVLY 398
+ +++ Y
Sbjct: 60 ELGGERVILDY 70
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +3
Query: 141 QRRANVRLPPEVN-----RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVG----NTPET 293
+RRA+ R P + + I+NL + + +IF YGAI+ + + +
Sbjct: 115 RRRASPRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVH 174
Query: 294 RGTAFVVYEDIFDAKNACDHLSG 362
RG +V Y+++ DA+ + H+ G
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDG 197
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 120 TKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPE 290
T A + +V+ P N L+I +LP ++ + F +G I +V T
Sbjct: 317 TTSAAQMVGNGDVKGPDGAN--LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNL 374
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ FV YE+ A NA ++GF + ++ L V
Sbjct: 375 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 408
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 120 TKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPE 290
T A + +V+ P N L+I +LP ++ + F +G I +V T
Sbjct: 481 TTSAAQMVGNGDVKGPDGAN--LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNL 538
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ FV YE+ A NA ++GF + ++ L V
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYED---IFDAKNA 344
R L+I L K + E + +IF K+G I V ++RG AFV + + A
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Query: 345 CDHLSGFNVCNRYLVVLYYRSNK 413
H C+ LVV + + K
Sbjct: 202 MHHSQTMEGCSAPLVVKFADTQK 224
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 120 TKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPE 290
T A + +V+ P N L+I +LP ++ + F +G I +V T
Sbjct: 481 TTSAAQMVGNGDVKGPDGAN--LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNL 538
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ FV YE+ A NA ++GF + ++ L V
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYED---IFDAKNA 344
R L+I L K + E + +IF K+G I V ++RG AFV + + A
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Query: 345 CDHLSGFNVCNRYLVVLYYRSNK 413
H C+ LVV + + K
Sbjct: 202 MHHSQTMEGCSAPLVVKFADTQK 224
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 120 TKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPE 290
T A + +V+ P N L+I +LP ++ + F +G I +V T
Sbjct: 410 TTSAAQMVGNGDVKGPDGAN--LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNL 467
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ FV YE+ A NA ++GF + ++ L V
Sbjct: 468 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 501
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYED---IFDAKNA 344
R L+I L K + E + +IF K+G I V ++RG AFV + + A
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Query: 345 CDHLSGFNVCNRYLVVLYYRSNK 413
H C+ LVV + + K
Sbjct: 202 MHHSQTMEGCSAPLVVKFADTQK 224
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 120 TKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPE 290
T A + +V+ P N L+I +LP ++ + F +G I +V T
Sbjct: 481 TTSAAQMVGNGDVKGPDGAN--LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNL 538
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
++ FV YE+ A NA ++GF + ++ L V
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKV 572
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYED---IFDAKNA 344
R L+I L K + E + +IF K+G I V ++RG AFV + + A
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Query: 345 CDHLSGFNVCNRYLVVLYYRSNK 413
H C+ LVV + + K
Sbjct: 202 MHHSQTMEGCSAPLVVKFADTQK 224
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 359
++I+NL I + +YD F +G I +V + ++G FV +E A+NA ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 360 GFNVCNRYLVV 392
G + + + V
Sbjct: 182 GMLLAGKKVFV 192
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 51 DTXKNHTTIYFHXLTNCKNKFIHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEM 230
D+ T + H K H ++ ++ R+ LY++NL + + +
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 333
Query: 231 YDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
F YG I +V ++G FV +E +A +A ++ VC++ L V
Sbjct: 334 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP-ETRGTAFVVYEDIFDAKNACDHLSG 362
+Y++N + E + +F K+G I V +++G FV + + +A+ A L
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 363 FNVCNRYLVVLYYRS-NKAFKGIDIDKKQEE--IDTLKKKYGIS 485
+ L + R+ K+ + ++ KK E+ + ++K G++
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVN 318
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 51 DTXKNHTTIYFHXLTNCKNKFIHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEM 230
D+ T + H K H ++ ++ R+ LY++NL + + +
Sbjct: 214 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 273
Query: 231 YDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
F YG I +V ++G FV +E +A +A ++ VC++ L V
Sbjct: 274 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 329
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP-ETRGTAFVVYEDIFDAKNACDHLSG 362
+Y++N + E + +F K+G I V +++G FV + + +A+ A L
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 363 FNVCNRYLVVLYYRS-NKAFKGIDIDKKQEE--IDTLKKKYGIS 485
+ L + R+ K+ + ++ KK E+ + ++K G++
Sbjct: 215 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVN 258
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 359
++I+NL I + +YD F +G I +V + ++G FV +E A+NA ++
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 360 GFNVCNRYLVV 392
G + + + V
Sbjct: 119 GMLLAGKKVFV 129
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 51 DTXKNHTTIYFHXLTNCKNKFIHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEM 230
D+ T + H K H ++ ++ R+ LY++NL + + +
Sbjct: 211 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 270
Query: 231 YDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
F YG I +V ++G FV +E +A +A ++ VC++ L V
Sbjct: 271 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 326
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP-ETRGTAFVVYEDIFDAKNACDHLSG 362
+Y++N + E + +F K+G I V +++G FV + + +A+ A L
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 363 FNVCNRYLVVLYYRS-NKAFKGIDIDKKQEE--IDTLKKKYGIS 485
+ L + R+ K+ + ++ KK E+ + ++K G++
Sbjct: 212 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVN 255
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 359
++I+NL I + +YD F +G I +V + ++G FV +E A+NA ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 360 GFNVCNRYLVV 392
G + + + V
Sbjct: 182 GMLLAGKKVFV 192
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = +3
Query: 51 DTXKNHTTIYFHXLTNCKNKFIHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEM 230
D+ T + H K H ++ ++ R+ LY++NL + + +
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 333
Query: 231 YDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVV 392
F YG I +V ++G FV +E +A +A ++ VC++ L V
Sbjct: 334 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP-ETRGTAFVVYEDIFDAKNACDHLSG 362
+Y++N + E + +F K+G I V +++G FV + + +A+ A L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 363 FNVCNRYLVVLYYRS-NKAFKGIDIDKKQEE--IDTLKKKYGIS 485
+ L + R+ K+ + ++ KK E+ + ++K G++
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVN 318
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 216 SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCN 377
S + + F +G + Q+ + P RG FV+YED A H SG ++ N
Sbjct: 160 SVDSLRVYFETFGTLDQVEILGQP--RGLGFVIYEDKESADRCLAHNSGRHIVN 211
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 216 SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCN 377
S + + F +G + Q+ + P RG FV+YED A H SG ++ N
Sbjct: 180 SVDSLRVYFETFGTLDQVEILGQP--RGLGFVIYEDKESADRCLAHNSGRHIVN 231
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 216 SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCN 377
S + + F +G + Q+ + P RG FV+YED A H SG ++ N
Sbjct: 181 SVDSLRVYFETFGTLDQVEILGQP--RGLGFVIYEDKESADRCLAHNSGRHIVN 232
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEM-------YD----IFGKYGAIRQIRVGNTPETRGTAFVVYED 323
NR +Y+ N+P+ + +E+ YD +F G I+ I + P G AFV ++
Sbjct: 16 NRQVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPP--GFAFVTFKR 73
Query: 324 IFDAKNACDHLSGFNVCN 377
A +A +L+G +C+
Sbjct: 74 TVHAFDAVKYLNGKKICD 91
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 356
N +Y+ N+ + + ++ D+F YG I ++R+ +T+ AFV YE A A +
Sbjct: 236 NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIF---KTQRYAFVRYEKKECATKAIMEM 292
Query: 357 SG 362
+G
Sbjct: 293 NG 294
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPETRGTAFVVYEDIFDAKNACDH 353
NRI Y+ N+P+ +++ +F YG + + V N ++G FV + I + A
Sbjct: 51 NRI-YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAA 109
Query: 354 LSGFNVCNRYLVV 392
L +V R + V
Sbjct: 110 LHESHVQGRIIEV 122
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 177 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPETRGTAFVVYEDIFDAKNACDH 353
NRI Y+ N+P+ +++ +F YG + + V N ++G FV + I + A
Sbjct: 51 NRI-YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAA 109
Query: 354 LSGFNVCNRYLVV 392
L +V R + V
Sbjct: 110 LHESHVQGRIIEV 122
>Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
L++ NL +++ + + +F + ++R+ N + AFV Y D+ A A L GF
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSC-VAFVEYSDLQKATQAMISLQGF 288
Query: 366 NV 371
+
Sbjct: 289 QI 290
>Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical
protein F46A9.6 protein.
Length = 312
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
L++ NL +++ + + +F + ++R+ N + AFV Y D+ A A L GF
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSC-VAFVEYSDLQKATQAMISLQGF 288
Query: 366 NV 371
+
Sbjct: 289 QI 290
>X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
L++ NL +++ + + +F + ++R+ N + AFV Y D+ A A L GF
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSC-VAFVEYSDLQKATQAMISLQGF 288
Query: 366 NV 371
+
Sbjct: 289 QI 290
>X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein.
Length = 312
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 365
L++ NL +++ + + +F + ++R+ N + AFV Y D+ A A L GF
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSC-VAFVEYSDLQKATQAMISLQGF 288
Query: 366 NV 371
+
Sbjct: 289 QI 290
>AL110482-5|CAB60338.2| 704|Caenorhabditis elegans Hypothetical
protein Y39G8B.5 protein.
Length = 704
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 291 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKK 470
T G + +Y D F AK A + + LV + A D+D EID LKK
Sbjct: 14 TDGEMYTLYNDEFMAKGAYSQVYRGRTESGRLVAVKTARKTASNKADVDAMCTEIDILKK 73
Query: 471 KYGISS 488
G+++
Sbjct: 74 LKGVAN 79
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +3
Query: 183 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDH 353
++ I+ +P+ +E+ F ++G + +IRV T +G A+V +++ A+ A +
Sbjct: 33 VVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAES 92
Query: 354 LSGF 365
++G+
Sbjct: 93 MNGY 96
>Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical
protein F40D4.7 protein.
Length = 295
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 520 YFIVYHLRRSSLDIPYFFFNV--SISSCFLSISIPLKALL 407
YFI+Y + L++PY NV +++SCF PLK ++
Sbjct: 142 YFILYVICNYQLNVPYNCVNVGCAMNSCFRQYFRPLKLII 181
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/61 (21%), Positives = 35/61 (57%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 359
++LYIRN+ ++ E++ ++F +Y ++ +++ + + AF+ + + D A + +
Sbjct: 377 KVLYIRNIKEAVTEEKLNELFKEYASLDRVK-----KVKDYAFIHFNERDDCLKAMEEWN 431
Query: 360 G 362
G
Sbjct: 432 G 432
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP---ETRGTAFVVYEDIFDAKNACDHL 356
+Y+ ++P + + + +F K G I +R+ P +RG AFV Y + DA A
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 357 SGFNV 371
G +
Sbjct: 262 DGHEI 266
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
+V+R L++ L E + FG++G + I + + A+VVYE+ ++ AC
Sbjct: 248 QVSRRLFVGGLGSWCDKEILQKAFGEFGFVENI---DYDHGQPYAYVVYENTHTSQEACR 304
Query: 351 HLSG 362
L G
Sbjct: 305 SLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
+V+R L++ L E + FG++G + I + + A+VVYE+ ++ AC
Sbjct: 248 QVSRRLFVGGLGSWCDKEILQKAFGEFGFVENI---DYDHGQPYAYVVYENTHTSQEACR 304
Query: 351 HLSG 362
L G
Sbjct: 305 SLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 171 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 350
+V+R L++ L E + FG++G + I + + A+VVYE+ ++ AC
Sbjct: 225 QVSRRLFVGGLGSWCDKEILQKAFGEFGFVENI---DYDHGQPYAYVVYENTHTSQEACR 281
Query: 351 HLSG 362
L G
Sbjct: 282 SLRG 285
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQI---RVGNTPETRGTAFVVYEDIFDAKNACD 350
+++++RNL Y E + + K+G I + ++ ++GTAFV + +A N +
Sbjct: 263 KVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIE 322
Query: 351 HL-SGFNVCNR 380
+ G + NR
Sbjct: 323 GVEDGVIIDNR 333
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYED---IFDAKNA 344
R L+I L K + E + +IF K+G I V ++RG AFV + + A
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKE 201
Query: 345 CDHLSGFNVCNRYLVVLYYRSNK 413
H C+ LVV + + K
Sbjct: 202 MHHSQTMEGCSAPLVVKFADTQK 224
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP--ETRGTAFVVYEDIFDAKNACD 350
LYI NLP + + + K+G + R+ TP ++RG F D+K C+
Sbjct: 190 LYIANLPLDFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFA----RMDSKEKCE 242
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP--ETRGTAFVVYEDIFDAKNACD 350
LYI NLP + + + K+G + R+ TP ++RG F D+K C+
Sbjct: 164 LYIANLPLDFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFA----RMDSKEKCE 216
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 186 LYIRNLPYKISAEEMYDIFGKYGAIRQIR--VGNTPETRGTAFVVYE 320
+++RN+ ++ + +E+ +F K+G + +R + +G AFV ++
Sbjct: 685 VFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFD 731
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 180 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVY 317
R L+I L K + E + +IF K+G I V ++RG AFV +
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,719
Number of Sequences: 27780
Number of extensions: 274513
Number of successful extensions: 788
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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