Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_F04
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.009
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.009
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.009
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 26 2.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.3
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.3
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 30 2.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.0
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 4.0
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 5.2
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 5.2
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 5.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXP 678
P PGG PPPP GG PPP P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Frame = -2
Query: 725 PPPPXG--GXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXXXXXXXXKX 552
PPPP G PPP P G G P PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPI--TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 551 PPXPPRXXGKKKXXPP 504
PP PP G K PP
Sbjct: 771 PPPPPPPGGFKGGPPP 786
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/91 (27%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Frame = -2
Query: 755 PXPGGXXKXX----PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXX 597
P PGG PPPP GG + PPP P G GG PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Query: 596 PXXXXXXXXXXXXKXPPXP-PRXXGKKKXXP 507
P PP P+ G + P
Sbjct: 790 PGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Frame = +2
Query: 581 PPPXGGXXGXFFXXXXPPXX----PXXKKKXXXXXXXGGGGGXCXPPPXGG--GGXXXPX 742
PPP GG PP P GG PPP GG GG P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Query: 743 PPG 751
PPG
Sbjct: 789 PPG 791
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 725 PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPP-XXPXXXXXXXXXXXX 558
PPPP GG PPP P G GG P PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 557 KXPPXPP 537
PP PP
Sbjct: 782 GGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXP 678
P PGG PPPP GG PPP P
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Frame = -2
Query: 725 PPPPXG--GXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXXXXXXXXKX 552
PPPP G PPP P G G P PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPI--TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 551 PPXPPRXXGKKKXXPP 504
PP PP G K PP
Sbjct: 771 PPPPPPPGGFKGGPPP 786
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/91 (27%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Frame = -2
Query: 755 PXPGGXXKXX----PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXX 597
P PGG PPPP GG + PPP P G GG PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Query: 596 PXXXXXXXXXXXXKXPPXP-PRXXGKKKXXP 507
P PP P+ G + P
Sbjct: 790 PGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Frame = +2
Query: 581 PPPXGGXXGXFFXXXXPPXX----PXXKKKXXXXXXXGGGGGXCXPPPXGG--GGXXXPX 742
PPP GG PP P GG PPP GG GG P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Query: 743 PPG 751
PPG
Sbjct: 789 PPG 791
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 725 PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPP-XXPXXXXXXXXXXXX 558
PPPP GG PPP P G GG P PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 557 KXPPXPP 537
PP PP
Sbjct: 782 GGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXP 678
P PGG PPPP GG PPP P
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Frame = -2
Query: 725 PPPPXG--GXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXXXXXXXXKX 552
PPPP G PPP P G G P PP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPI--TGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 551 PPXPPRXXGKKKXXPP 504
PP PP G K PP
Sbjct: 354 PPPPPPPGGFKGGPPP 369
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/91 (27%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Frame = -2
Query: 755 PXPGGXXKXX----PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXX 597
P PGG PPPP GG + PPP P G GG PP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Query: 596 PXXXXXXXXXXXXKXPPXP-PRXXGKKKXXP 507
P PP P+ G + P
Sbjct: 373 PGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 403
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Frame = +2
Query: 581 PPPXGGXXGXFFXXXXPPXX----PXXKKKXXXXXXXGGGGGXCXPPPXGG--GGXXXPX 742
PPP GG PP P GG PPP GG GG P
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Query: 743 PPG 751
PPG
Sbjct: 372 PPG 374
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 725 PPPPXGGX---NNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPP-XXPXXXXXXXXXXXX 558
PPPP GG PPP P G GG P PP P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPI------SGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 557 KXPPXPP 537
PP PP
Sbjct: 365 GGPPPPP 371
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXP 678
P G PPPP G N PPP P
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPP 555
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 26.2 bits (55), Expect(2) = 2.0
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = -2
Query: 608 PPXXPXXXXXXXXXXXXKXPPXPPRXXGKKKXXPPXGG 495
PP P PP PP G PP GG
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGG 598
Score = 22.2 bits (45), Expect(2) = 2.0
Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Frame = -2
Query: 758 RPXPGGXXKXXPPPPXGG-----XNNXPPPXP 678
RP P PPPP G N P P P
Sbjct: 532 RPAPPPVSSIPPPPPIAGLLAANGTNVPIPPP 563
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +2
Query: 581 PPPX--GGXXGXFFXXXXPPXXPXXKKKXXXXXXXGGGGGXCXPPPXGGGGXXXPXPPG 751
PPP G G P P GG G PPP GG G P P G
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTG 450
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Frame = +1
Query: 580 PPPPXGXXGGFFYXGXPPXXPXXKKKXXXPXXXGXGGGXLFXPP-----XGGGGXXXSXP 744
PPPP G G PP P G GG PP GGGG
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGGGPPFRPE 815
Query: 745 PGXGR 759
G GR
Sbjct: 816 NGRGR 820
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 743 GXXKXXPPPPXGGXNNXPPPXPXXXG 666
G PPPP GG ++ PPP G
Sbjct: 765 GPMSSFPPPPRGGMHHMPPPPSFRGG 790
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +2
Query: 680 GGGGGXCXPPP----XGGGGXXXPXPPGXA 757
GGGGG C PPP GG G P G A
Sbjct: 23 GGGGGCCAPPPPPPCGGGCGGGAPAAGGYA 52
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 225 FFXXPPTPQLLXXPPXPPGTSPP*XXXGVYLGAXPXP 335
FF PP P PP PG PP ++ G P P
Sbjct: 63 FFIPPPVPNGFIPPPPGPGGIPP--PPPMFAGGIPPP 97
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 680 GGGGGXCXPPPXGGGGXXXPXPP 748
GGGGG C GGG P PP
Sbjct: 93 GGGGGGCGGGGGCGGGCAPPPPP 115
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 725 PPPPXGGXNNXPPPXP 678
PPPP GG PPP P
Sbjct: 43 PPPPCGGGYEAPPPPP 58
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/89 (28%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXG-----GXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPX 591
P P G PPPP G PPP P GG P PP P
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP---------GGMPP-PPPPRYPS 357
Query: 590 XXXXXXXXXXXKXPPXPPRXXGKKKXXPP 504
PP PP G PP
Sbjct: 358 AGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXX 576
P PG + PPPP G PPP P G+ G P P P
Sbjct: 279 PTPGMTPRP-PPPPSSGMWPPPPPPP-----------PGRTPGPPGMPGMPPPPPPSRFG 326
Query: 575 XXXXXXKXPPXPP--RXXGKKKXXPP 504
PP PP R G PP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/89 (28%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXG-----GXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPX 591
P P G PPPP G PPP P GG P PP P
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP---------GGMPP-PPPPRYPS 367
Query: 590 XXXXXXXXXXXKXPPXPPRXXGKKKXXPP 504
PP PP G PP
Sbjct: 368 AGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXX 576
P PG + PPPP G PPP P G+ G P P P
Sbjct: 289 PTPGMTPRP-PPPPSSGMWPPPPPPP-----------PGRTPGPPGMPGMPPPPPPSRFG 336
Query: 575 XXXXXXKXPPXPP--RXXGKKKXXPP 504
PP PP R G PP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPP 362
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = +3
Query: 156 KKXNSXPKXVSG*NITPPXIRNXFFXXPPTPQLLXXPPXPPGTSPP*XXXGVYLGAXP 329
K+ +S + V G PP FF PP PP SP GV LGA P
Sbjct: 309 KQVDSLKEQVYGKPNPPPPSAGYFFQAPPPAPASSSSTVPPAVSP----FGVPLGAQP 362
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 680 GGGGGXCXPPPXGGGG 727
GGGGG PPP GGG
Sbjct: 266 GGGGGYPQPPPQQGGG 281
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +2
Query: 680 GGGGGXCXPP-PXGGGG 727
GGGGG C PP P GGG
Sbjct: 61 GGGGGCCPPPAPACGGG 77
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Frame = +2
Query: 680 GGGGGXCXPPP-------XGGGGXXXPXPPGXA 757
GGGG C PPP GGGG PP A
Sbjct: 23 GGGGCGCAPPPPPPACGCGGGGGGYAAPPPAYA 55
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/87 (25%), Positives = 24/87 (27%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXX 576
P P G PPPP G + PPP P + GG P P
Sbjct: 282 PPPAGGS---PPPPRAG--SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336
Query: 575 XXXXXXKXPPXPPRXXGKKKXXPPXGG 495
P P PP GG
Sbjct: 337 RQAPERSPPTGSPPTGSPPTGRPPRGG 363
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/87 (25%), Positives = 24/87 (27%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXX 576
P P G PPPP G + PPP P + GG P P
Sbjct: 303 PPPAGGS---PPPPRAG--SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357
Query: 575 XXXXXXKXPPXPPRXXGKKKXXPPXGG 495
P P PP GG
Sbjct: 358 RQAPERSPPTGSPPTGSPPTGRPPRGG 384
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/87 (25%), Positives = 24/87 (27%)
Frame = -2
Query: 755 PXPGGXXKXXPPPPXGGXNNXPPPXPXXXGXXXFFFXXGKXGGXPX*KXPPXXPXXXXXX 576
P P G PPPP G + PPP P + GG P P
Sbjct: 288 PPPAGGS---PPPPRAG--SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342
Query: 575 XXXXXXKXPPXPPRXXGKKKXXPPXGG 495
P P PP GG
Sbjct: 343 RQAPERSPPTGSPPTGSPPTGRPPRGG 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,429
Number of Sequences: 27780
Number of extensions: 274606
Number of successful extensions: 1471
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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