Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_E22
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0301 - 3319562-3320008 33 0.40
10_08_0229 - 16016818-16017387 31 1.6
08_02_1292 + 25943074-25943643 30 2.9
04_03_1017 + 21747044-21748051 30 2.9
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 30 2.9
10_08_0227 - 16004868-16005449 29 3.8
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 3.8
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 28 8.7
04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261 28 8.7
01_06_1794 - 39919363-39920025 28 8.7
01_05_0490 + 22672241-22674679 28 8.7
>10_01_0301 - 3319562-3320008
Length = 148
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 286 CAPPATARLR--PRGRSRTPPRLRIGIRVWWFAWWRPSRTAW 167
C P A RL P R P LR R+WW W R SRTAW
Sbjct: 49 CYPSALLRLSLSPPPSPRHPRALR---RIWW--WCRSSRTAW 85
>10_08_0229 - 16016818-16017387
Length = 189
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +1
Query: 532 GGGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPXLWTASGGSPSYGSNAIXADEYXESA 711
GGGG G Y+ S + ++ + + P +++ G G AD Y S+
Sbjct: 70 GGGGGGNGGGRYSGSGHGSGSGRGSSSSQVGPDPYRGSSNAGGTGGGEGGGRADGYYGSS 129
Query: 712 AXGGG 726
G G
Sbjct: 130 GYGSG 134
>08_02_1292 + 25943074-25943643
Length = 189
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 283 RSYQELRPAHARDM-QPYAH-LDDALFKP----PTPGAASTDGVYLRRSPELSPSP 432
R L P H R + + YAH + LF+P P P AA+ V+ +P ++P+P
Sbjct: 87 RRRHALTPGHVRAIAERYAHDVGSVLFRPLPPPPPPVAAAAVPVFAAPAPPMAPAP 142
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 361 PPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHY 474
PP P AAS D Y +P SP P + + P P Y
Sbjct: 268 PPPPRAASPD--YTPSTPPSSPLPSAAESFTVPPPRRY 303
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 598 YFTNGADLSAQPXLWTASGGSPSYGSNAIXADEYXES-AAXGGGXCRLQHAVRRGLAWAT 774
Y +G A+ W S G S ++ ++ AA GG CR A R ++WA
Sbjct: 247 YPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAALVGGCCRTSPATVRAISWAL 306
Query: 775 R 777
R
Sbjct: 307 R 307
>10_08_0227 - 16004868-16005449
Length = 193
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 535 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPXLWTASGGSPSYG 672
GGGNG+ SSV N+ PY A + SGGS S G
Sbjct: 137 GGGNGSGSSVANNGTPNTPPPYANANASGNGNGNGGGQSGGSGSGG 182
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 286 SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPER---RDDYRP 456
SY P+++ Y+ A + P +PG + T Y SP +PS + Y P
Sbjct: 1765 SYSPTSPSYSPTSSAYSPTSPA-YSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSP 1823
Query: 457 PAPLHY 474
+P +Y
Sbjct: 1824 SSPNYY 1829
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 256 PRGRSRTPPRLRIGIRVWWFAWWRPSRTA 170
PRG+ PP + IR WF W + TA
Sbjct: 272 PRGKDWVPPECDVSIRPGWF--WHKNETA 298
>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
Length = 326
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 277 PATARLRPRGRSRTPPRLRIGIRVWWF 197
PA AR R GR R R+G W+F
Sbjct: 64 PARARARAAGRRRREDAARVGATEWYF 90
>01_06_1794 - 39919363-39920025
Length = 220
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +1
Query: 535 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPXLWTASGGSPSYGSNAIXADEYXESAA 714
GGG G ++ + Y NG + L+ A G+P YG S
Sbjct: 79 GGGYGGSTKANAGANYGGGGGYGYNGGYNAGSVTLYGAGVGTPYYGGGGGGGYTGGGSVP 138
Query: 715 XGGG 726
GGG
Sbjct: 139 YGGG 142
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 310 HARDMQPYAHLDDALFKPPTPGA-ASTDGVYLRRSPELSPSPERRDDYRPPAP 465
H + + HL D + P+ A AS D +P +P+P RR PP P
Sbjct: 564 HHHNHHHHHHLSDGHYSSPSSDASASPDSTVRTTNP--APAPPRRPPPPPPPP 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,528
Number of Sequences: 37544
Number of extensions: 355845
Number of successful extensions: 2003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -